Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00396 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGTCAAAGTCTACTTCATCAAAGAAGAATGATATTTTTAAACCTTCTAGTGACAAGGATGCGCTGGTGTCGTCTGAGGTGCCCGTGTCTGATCCAACCGTTGATTCGTTGCAGATATCCGCACCAATATCTGGAGCTAATGATTCTAAAGGAGTGCTTTCCGAAAAGGAGGTAGTTAGTAGGTCATCACATGATAGGGATGTTCTTTCAACTGGAGTTGAAGAAGCTAAGGTGCAAGATGTTGCTAATTTTGGATCTCAAGAGGATCTTGAGAAACTCCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATCTGGCTCGTCAAACATTTAAAAAACTCGAAGGTGTCATACAACTACAAGCTTTTATTCGTGGCCACTTGGTTCGAAGACAAGCTGTTTCTGCATTATATTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGGCTTGCAATCCAAAAAATTCGTAAGGATACCCATTGCTCAAATTCTGTTCGGGTAGCTTCATCCACACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCAACAGTGATCCTGGAGAACCTAACATGGTTCGGAAGTGGCTTGACTATTGGACAAGGTCACACTTTTGGGCACCTCTTCCTGAATTAGAAAAGAAACTTGGCTCAGCGTCTGATGAGAAAAATGGCAGTTCTCAGACAGTTCAAAAGGGGCAAATTAAAAAAATTACTCGGAAATATCCGGCTGTGAAAGCTAAGAATGGCTCAAATTTAGGTTCTAACAAATCTAAACAGTGTCCAAAAAAGGATTCAAGCCACCCATTGCCTTCAGCGCAGGAACACCCACAGAAAGAAACGGAGAAAAGTAGTTTTGAAAAGACTCACGCACATAATGTTTCAAATGGATCTGAGGTTGTTAGTGAAAAAAGGAAATCTGGCAATAAAAAGATTTTGGATCATGCTGTCACTGATGTTTCAGAGCAGGGCCCAAATGCCTCTTCAGAGAAAAAGAAAGATTTGACCGTGCCAAAGTCAAAAGAGTCTGATCCTGAGAAAGGTGATGGACAGGAAGCAAAAGACAAGAATGATAATGAGCTACATCGTTACCCTGTTGCCGTCTTAAAGACAACTGTGATGAAGGGTGAAAACGAAGGATATCAAGGAGTCAGTGAGAATTTGAATGGTGGTGACAATTGCATGAGTAACAATAGCCAAAGAAGAGCTTCATTACCTGCTAACTTTAATGATCAAGAGAATGAGTTATATAACACTCCTGTTACTCCAAGACTGCCAAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCAAGATTTGCTAATGATTTGGTAGACAAAAACAGTACAACCAGGCGGCATTCACTTTCATCTTCACTTAATGGCAGGTCAGGTTCATTTTCCCCAAGAGCTGAAAAGCTGATAGGCGTAAGCGGCAGAGGAGGGATAAAGTCTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1692 0.419 MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPSSDKDALVSSEVPVSDPTVDSLQISAPISGANDSKGVLSEKEVVSRSSHDRDVLSTGVEEAKVQDVANFGSQEDLEKLQLTEAAIKVQAACRSYLARQTFKKLEGVIQLQAFIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGLAIQKIRKDTHCSNSVRVASSTQAEKLSENVFVCKLLASSPYAVPLSLNSDPGEPNMVRKWLDYWTRSHFWAPLPELEKKLGSASDEKNGSSQTVQKGQIKKITRKYPAVKAKNGSNLGSNKSKQCPKKDSSHPLPSAQEHPQKETEKSSFEKTHAHNVSNGSEVVSEKRKSGNKKILDHAVTDVSEQGPNASSEKKKDLTVPKSKESDPEKGDGQEAKDKNDNELHRYPVAVLKTTVMKGENEGYQGVSENLNGGDNCMSNNSQRRASLPANFNDQENELYNTPVTPRLPSYMAPTESAKARLRGQGSPRFANDLVDKNSTTRRHSLSSSLNGRSGSFSPRAEKLIGVSGRGGIKSDRSLSSSRDGTEKLIQPQWRR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00396 563 PANTHER IQ-DOMAIN 5-RELATED 1 560 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 376 413 - -
Gma01g00396 563 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 560 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 17 31 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 508 523 - -
Gma01g00396 563 SMART iq_5 114 136 IPR000048 GO:0005515
Gma01g00396 563 SMART iq_5 137 158 IPR000048 GO:0005515
Gma01g00396 563 SMART iq_5 162 184 IPR000048 GO:0005515
Gma01g00396 563 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Gma01g00396 563 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Gma01g00396 563 Pfam IQ calmodulin-binding motif 141 156 IPR000048 GO:0005515
Gma01g00396 563 MobiDBLite consensus disorder prediction 16 62 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 271 285 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 267 414 - -
Gma01g00396 563 ProSiteProfiles IQ motif profile. 137 166 IPR000048 GO:0005515
Gma01g00396 563 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Gma01g00396 563 MobiDBLite consensus disorder prediction 541 555 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 482 563 - -
Gma01g00396 563 Gene3D - 112 161 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 353 367 - -
Gma01g00396 563 Pfam Protein of unknown function (DUF4005) 462 542 IPR025064 -
Gma01g00396 563 MobiDBLite consensus disorder prediction 325 339 - -
Gma01g00396 563 MobiDBLite consensus disorder prediction 299 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00396 Gma-Chr1 4848928 4853865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00396 4 563 IQD Protein Family AT1G14380 34.861 9.71e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00396 - - gmx:100800548 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00396 01 4848928 4853865 Gma01g00396 01 4848928 4853865 ECH
Gma01g00396 01 4848928 4853865 Gma06g01707 06 17208312 17218562 ECH
Gma01g00396 01 4848928 4853865 Gma04g01676 04 45580518 45587717 ECH
Gma01g00396 01 4848928 4853865 Gma05g00278 05 2504957 2512810 ECH
Gma01g00396 01 4848928 4853865 Gma17g00925 17 7894922 7902093 ECH
Gma01g00396 01 4848928 4853865 Gma17g00925 17 7894922 7902093 PCT
Gma01g00396 01 4848928 4853865 Gma05g00278 05 2504957 2512810 PCT