Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00388 ATGATTTGGGTTCGCGGAGACTCTCTCGGCACTGGCAGCTTCGCCACCGTCAACATAGCCATACCCACAAATACTTCCATTCATTTTCCTTCTCCCACCGCCGTCAAATCCTCCGATGTTCACTCCTCGTCTATGCTGAAAAACGAGAAGGAGATACTCGATTGCCTTGGAGCTTCCCCTTATAACATTTTCCTCGAATACGCCGCCGGTGGTTCTCTCGCCGATCAGGTCAAAAGACACGGCGGGAGGCTTCCGGAGTCTTACGTTCGGAGGTGTACGAGGTCGATCGTCGAAGGTCTAAAACATATTCACGACAACGGTTATGTTCACTGCGATGTGAAGCTTCAAAACATTCTCGTTTTTGAGAATGGGGATGTTAAGATCGCCGATTTTGGGCTCGCGAAGGAGAAAGGGGAGAAACAGGGGACGTTTGAGTGCAGGGGGACGCCGTTGTTTATGTCGCCGGAATCTGTGAACGACAATGAGTACGAGTCGCCGGCGGATATTTGGGCTTTGGGCTGCGCAGTCGTGGAGATGCTGACCGGAAAACCCGCGTGGGATGTTCGCGGGTCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCCAAGATTCCAGAAGAGTTATCAGAAGAGGGAAAAGATTTTCTTTTGAAATGTTTCGTTAAGGATCCAATGAAGAGGTGGAGCGCTGAGATGCTTTTGCATCACCCTTTCGTTAACAATGAAACGGTTTCTTTTCACAAAGTTAATGAGCCGTTGCCGTTACCGTCTCCGTCACCGAGGACACACTTTGATTTAACTCACTGGGCTTCCACCGTAACGACGTGGCTTCCGTCTTCCCCTGATTCTGATGAGTGGCGTATGGCGGAATTCGGGTCCTCGTGTTCGCCGGAGAATCGGTTTCGGCGGCTGCTCACCGATCAGACGCCGGCGAATTGGTCAGAATCGGATGGCTGGACAAGCGTTAGGTGA 987 0.5106 MIWVRGDSLGTGSFATVNIAIPTNTSIHFPSPTAVKSSDVHSSSMLKNEKEILDCLGASPYNIFLEYAAGGSLADQVKRHGGRLPESYVRRCTRSIVEGLKHIHDNGYVHCDVKLQNILVFENGDVKIADFGLAKEKGEKQGTFECRGTPLFMSPESVNDNEYESPADIWALGCAVVEMLTGKPAWDVRGSNIWSLLIRIGVGEELPKIPEELSEEGKDFLLKCFVKDPMKRWSAEMLLHHPFVNNETVSFHKVNEPLPLPSPSPRTHFDLTHWASTVTTWLPSSPDSDEWRMAEFGSSCSPENRFRRLLTDQTPANWSESDGWTSVR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00388 328 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Gma01g00388 328 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 282 - -
Gma01g00388 328 Gene3D Transferase(Phosphotransferase) domain 1 3 274 - -
Gma01g00388 328 CDD STKc_MAPKKK 3 244 - -
Gma01g00388 328 ProSiteProfiles Protein kinase domain profile. 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00388 328 SUPERFAMILY Protein kinase-like (PK-like) 5 286 IPR011009 -
Gma01g00388 328 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 282 - -
Gma01g00388 328 Pfam Protein kinase domain 59 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00388 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Gma01g00388 328 SMART serkin_6 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00388 Gma-Chr1 4770771 4771811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00388 1 328 MAP Kinase Kinase Kinase AT4G36950 50.712 9.39e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma01g00388 Pkinase 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00388 - - gmx:100797177 673.315