Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00387 ATGGCGCAGGTTCAGTCCATTACCTTGAAGCATCTCTCACTACCAACCCATACTTTCGTTCCTCCAAAGTTCAACATTCCTTTGAACCGCAATTTGTCTTTCACGCCTAAATTCACATTCTCAACATCACTCTCCGTCAGATGCTACCACCCTAACCTTGTCCAACCCAAGCCATTCCCACCACTGCCACAACGCCCTCCAGTTGCAGAATTGCCACAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAGGAAGGGCGTGCTCACCGTGACTCCTAGACCTCCGGAATTTGAATCGAAAAGTTCTGGGGCGTTCAAAGTGTCCAAGGAAGGTTATGTTGTGCTCCAGTTTGCTCCCTCAGTTGGTGCTGATGAGCCCATATATGATTGGAACCAAAAGCAGATATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTACCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTTGAAAAGCAATGAAACTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCAAAAGAAGCCTGTGAACATGGAGGGAATTCAGAAAAACATCTCTCTCCCTGTTACAAGGGCAGAGCTAGCAGTTTTAAGGGTGCTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAATACCAACTCCAGATATGGAGCAGACAATGAATGGAACAGATAG 792 0.447 MAQVQSITLKHLSLPTHTFVPPKFNIPLNRNLSFTPKFTFSTSLSVRCYHPNLVQPKPFPPLPQRPPVAELPQQRVYVGYSVYTRKGVLTVTPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNQKQIFSLSVSEMGTLITLGARDSWEFSHETVKLKSNETEVRKVLKVEPLLDATGHLFSLSVQKKPVNMEGIQKNISLPVTRAELAVLRVLFNYIMPYLLGWNAFGNSIKPEVYSQVNNTNSRYGADNEWNR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00387 263 Gene3D Transcriptional Coactivator Pc4; Chain A 68 252 IPR009044 GO:0003677|GO:0006355
Gma01g00387 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 67 263 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma01g00387 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 67 263 - -
Gma01g00387 263 Pfam Whirly transcription factor 82 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma01g00387 263 SUPERFAMILY ssDNA-binding transcriptional regulator domain 74 263 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00387 Gma-Chr1 4760013 4764436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00387 44 263 Whirly Transcription Factor Family AT1G14410 53.182 1.33e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma01g00387 Whirly 8.3e-48 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00387 - - gmx:100797370 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00387 01 4760013 4764436 Gma01g00387 01 4760013 4764436 ECH
Gma01g00387 01 4760013 4764436 Gma18g01119 18 16291275 16294547 PCT