Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00379 ATGCCGATGGAGCTGGAGCTAGGTTCAACAACTATCCAGCGATCCTTCAACACGCGCTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGTGAAGTCCTGGGCCGACCCGCCGCCATCTTCCAGGGCCCGCGAACTTCGAGAAAATCCGTCATTGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTCTGCTCAACTACCGCAAAGACGGCACGCCGTTTTGGATGCTTTTTCGTGTTTGCCCCGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTGCCGCTTCAGAAAAAGGAAGGGTCTGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTATGCGCCGATTCGTTGGCGGAGATTGGTCGCGTTTGTTCATTAGAGCAAGTGCTGGAACCTGACGTTAGAGAATTGGAGAGAGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGCGTAGTGCAGTTAATGCTATGGACAATATATTTTCTGTGCTAACCCATTATAGTGAGGCGACGGGCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAGAGCATTAAAACAGAACAACCCTGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGTGGGATCTTCCAAGTCGTAG 1167 0.4936 MPMELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAAREVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSSDGGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCADSLAEIGRVCSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSHCLSPEKRQLNVVGVVKVAVRSLSMTVGSSKS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00379 388 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 132 IPR035965 -
Gma01g00379 388 CDD PAS 31 133 IPR000014 -
Gma01g00379 388 CDD PAS 257 345 IPR000014 -
Gma01g00379 388 Gene3D PAS domain 18 142 - -
Gma01g00379 388 Pfam PAS domain 33 134 IPR000014 -
Gma01g00379 388 Pfam PAS domain 248 346 IPR000014 -
Gma01g00379 388 PANTHER PROTEIN TWIN LOV 1 12 382 - -
Gma01g00379 388 SMART pas_2 235 308 IPR000014 -
Gma01g00379 388 SMART pas_2 22 91 IPR000014 -
Gma01g00379 388 PANTHER PROTEIN TWIN LOV 1 12 382 - -
Gma01g00379 388 ProSiteProfiles PAS repeat profile. 260 282 IPR000014 -
Gma01g00379 388 TIGRFAM sensory_box: PAS domain S-box protein 46 128 IPR000014 -
Gma01g00379 388 TIGRFAM sensory_box: PAS domain S-box protein 260 345 IPR000014 -
Gma01g00379 388 SMART pac_2 97 140 IPR001610 -
Gma01g00379 388 SMART pac_2 310 352 IPR001610 -
Gma01g00379 388 ProSiteProfiles PAC domain profile. 307 361 IPR000700 -
Gma01g00379 388 ProSiteProfiles PAS repeat profile. 20 68 IPR000014 -
Gma01g00379 388 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 346 IPR035965 -
Gma01g00379 388 Gene3D PAS domain 247 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00379 Gma-Chr1 4687487 4691725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00379 19 383 AGC Kinase Gene Family AT5G58140 30.657 4.71e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00379 - - gmx:100785562 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00379 01 4687487 4691725 Gma01g00379 01 4687487 4691725 ECH