Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00377 ATGGCGAGTGGCAAGCTTTATGCTGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAATCCGTGGTTGATTTTGAGAATGTTAATGGGAGCAGGGTGACGGATAGGCCCTTTTTTCAAGCGTTGGAGAAAGAAGAGAACTGTGATGAGGATTACGAGGGGTGTTTCCATCAACCGGGGAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTAGAGAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAAGAGCTTGGCTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACCGAAGAGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGACTATGGCGTGTTGAAAGCTAGTTATGATAGGCTCAAAGGTGACTATGAAAGTCTTGTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGGAGAATTCGGATGACAAGTCATCTCCTGATGATGCTGTCAATTCTTCACCCCACAACAACAAGGAGCCTATTATGGATTTATTAATTTCAAAAAATGCAACAACATCTGAAAATGGAACCGAAGTGTCAACACTCCCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGATAGCCCACATTGCACTGATTATGGGAACCACCCTTCCTCATTCGTGGAGCCTGCTGATTCCTCTCATGCCTTTGAACCAGAAGACCACTCAGAAGACTTCTCACAAGATGAAGAGGATAACCTTAGTGAAAACTTTTTGACCCTCCCTTCTTCTTGTTGCTTACCTAAGGTTGAAGAACCCTGCTATGATGACCCTCCAGAAAACTCTTGTAATTTTGGCTTCCATGTTGAGGATCAAACCTTCTGTTTCTGGCCCTACTGA 1038 0.4412 MASGKLYAGSNMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSVVDFENVNGSRVTDRPFFQALEKEENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLKAEVNSLESKLILRDKEKEENSDDKSSPDDAVNSSPHNNKEPIMDLLISKNATTSENGTEVSTLPLPIMVTCKQEDANSAKSDVLDSDSPHCTDYGNHPSSFVEPADSSHAFEPEDHSEDFSQDEEDNLSENFLTLPSSCCLPKVEEPCYDDPPENSCNFGFHVEDQTFCFWPY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00377 345 MobiDBLite consensus disorder prediction 183 198 - -
Gma01g00377 345 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Gma01g00377 345 MobiDBLite consensus disorder prediction 251 298 - -
Gma01g00377 345 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Gma01g00377 345 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Gma01g00377 345 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Gma01g00377 345 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Gma01g00377 345 SMART HOX_1 83 145 IPR001356 GO:0003677
Gma01g00377 345 Coils Coil 154 181 - -
Gma01g00377 345 MobiDBLite consensus disorder prediction 183 212 - -
Gma01g00377 345 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 345 - -
Gma01g00377 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 345 IPR045224 GO:0003700
Gma01g00377 345 CDD homeodomain 84 142 IPR001356 GO:0003677
Gma01g00377 345 Gene3D - 80 146 - -
Gma01g00377 345 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Gma01g00377 345 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00377 Gma-Chr1 4601563 4604197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00377 43 182 Homeobox Transcription Factor Family AT3G01470 56.429 2.54e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma01g00377 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00377 - K09338 gmx:547565 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00377 01 4601563 4604197 Gma01g00377 01 4601563 4604197 ECH