Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00376 ATGAGTCGCAAGAGAGACAGGTCAGCTTACTTTTCCCGCCACGACGCCGCCAAGCGCCGCCTCCCCTTGCCGGAGCCCGCGGAGGAGGAGACGCCTACGATGAGACCGGCGCCGCCGTCCGCGGTGGTCGTGATGGGCCTCCCCCAGGACTGCTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGATACATCACCTACCGGACCAAGGACTCCGCCGACGCTGCCATCGCCGCCGGCCTCGACCCCACCTTCGGAATCACCGTTAACTCTAAAATGGTTCAGGTGTTGTGGGCAACGGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAGGAACAAAGGTTCTATGTCAAAGCTTGTGCGTGCTGAGGTACCTTTGAGCAAGCATGGAAGAGGTAACAGACTTGCTTCACCCATAGGGAATACCAAACTTAGCGAGGCTAGCTCAGGTAGCTCAGTTTTAGAAGTGTCTTTCAAGGGCAGAGAAATTAACGAAGATGACAAGGATGAATCAGAACAACGAGTGTGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTAGGAACAAAAATTCTTCAGGATGAGCACTTTCCACAACTCCTTCATCAACCCTCTCTCTCCTCCATCTCTTCCCTTGCCTGTGGCGGCGCTCATGTCATTGCCTTGACCTCTGCTGGGAAGGTACTATCATGGGGTAGGGGCAATTCTGGCCAACTAGGCCATGGGTTGGTTGTGAGTAACTCTTTGTATCCCAAGGCTGTGACATCATTGGATGGCTACTTCATAACCCATGTCTCTGCTGGGTGGGGCCACTCTGGTTTTGTTTCAGATAATGGGTGTGTGTTCACTTGTGGGGATGGCTCCTTTGGTCAACTGGGGCATGGGGATCATGCCTCACACTGTTCTCCTGTCAAAGTGTCATGCTTTGTTGATCAGCATGTTGAGCAGGTGGCATGTGGCATGCGCCATTCCCTTGTCTTGTTAAAAGATTGTACAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCAGCAACGATAGGGTCAAATCTGTTAATGTTCCTAAAGTTGTTAGTGGGTTTGAAGGTGTTGAAATCGCTGGAATTGCTGCTAATGGTGACCATAGTGCTGCAGTATCTGtTGATGGGCATGTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCGTGTTCCTCAGTGCTTAAACTCTTCATTGAATTTTACCAAAGTTGCTCTGGGGTGGAACCATGCTTTAGCTATGAGTGGTGAGGGGGAGGTTTGTATGCTAGGTGGAAATCACCTTGGAGTGCTTAGTGATCTTCAGAACATAAGCCCAGCTAAGCATTTACCTCTAGATTTAAGAGAAGTCAATTTGGAGAAAGTCCCTGGTCTTGATGGGACGAAAATTACTGATATTGCTACTGGAGCTGAGCATTCTGTCATTGTCACAGAGCATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGTTTAGGGGATACTCGCGACCGAATCAGTCCTGTTACATTGCCATCAGCTTGGTTCTGGTTCTGA 1635 0.5095 MSRKRDRSAYFSRHDAAKRRLPLPEPAEEETPTMRPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKDSADAAIAAGLDPTFGITVNSKMVQVLWATDPLAMWREGVGNSRNKGSMSKLVRAEVPLSKHGRGNRLASPIGNTKLSEASSGSSVLEVSFKGREINEDDKDESEQRVWSWGAGTEGQLGTKILQDEHFPQLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGLVVSNSLYPKAVTSLDGYFITHVSAGWGHSGFVSDNGCVFTCGDGSFGQLGHGDHASHCSPVKVSCFVDQHVEQVACGMRHSLVLLKDCTGNQVYGFGSGKRGQLGVSNDRVKSVNVPKVVSGFEGVEIAGIAANGDHSAAVSVDGHVYTWGRGFKGFEDARVPQCLNSSLNFTKVALGWNHALAMSGEGEVCMLGGNHLGVLSDLQNISPAKHLPLDLREVNLEKVPGLDGTKITDIATGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDRISPVTLPSAWFWF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00376 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 510 544 IPR000408 -
Gma01g00376 544 SUPERFAMILY RNA-binding domain, RBD 29 124 IPR035979 GO:0003676
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 509 IPR000408 -
Gma01g00376 544 MobiDBLite consensus disorder prediction 1 37 - -
Gma01g00376 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
Gma01g00376 544 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 192 535 - -
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 294 IPR000408 -
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 403 IPR000408 -
Gma01g00376 544 SMART rrm1_1 41 111 IPR000504 GO:0003723
Gma01g00376 544 PANTHER OS01G0777800 PROTEIN 192 535 - -
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 190 241 IPR000408 -
Gma01g00376 544 Pfam Regulator of chromosome condensation (RCC1) repeat 493 522 - -
Gma01g00376 544 PRINTS Chromosome condensation regulator RCC1 signature 244 260 IPR000408 -
Gma01g00376 544 PRINTS Chromosome condensation regulator RCC1 signature 505 526 IPR000408 -
Gma01g00376 544 PRINTS Chromosome condensation regulator RCC1 signature 352 366 IPR000408 -
Gma01g00376 544 PRINTS Chromosome condensation regulator RCC1 signature 191 207 IPR000408 -
Gma01g00376 544 PRINTS Chromosome condensation regulator RCC1 signature 225 238 IPR000408 -
Gma01g00376 544 Gene3D - 2 117 IPR012677 -
Gma01g00376 544 Gene3D - 176 415 IPR009091 -
Gma01g00376 544 SUPERFAMILY RCC1/BLIP-II 189 460 IPR009091 -
Gma01g00376 544 MobiDBLite consensus disorder prediction 1 26 - -
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Gma01g00376 544 CDD RRM_SF 42 110 - -
Gma01g00376 544 Gene3D - 416 541 IPR009091 -
Gma01g00376 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 447 IPR000408 -
Gma01g00376 544 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 333 343 IPR000408 -
Gma01g00376 544 Pfam Regulator of chromosome condensation (RCC1) repeat 294 343 IPR000408 -
Gma01g00376 544 Pfam Regulator of chromosome condensation (RCC1) repeat 242 290 IPR000408 -
Gma01g00376 544 Pfam Regulator of chromosome condensation (RCC1) repeat 191 238 IPR000408 -
Gma01g00376 544 Pfam Regulator of chromosome condensation (RCC1) repeat 351 400 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00376 Gma-Chr1 4561440 4567367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00376 1 160 Homeobox Transcription Factor Family AT1G27050 52.907 1.73e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00376 - - gmx:100793672 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00376 01 4561440 4567367 Gma01g00376 01 4561440 4567367 ECH