Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00350 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCACGGACATGCACCGACGGTGGCGCCGCCGGGTCTCCGAGGGAGAACGGCATCATGCTGTTCGGCGTAAGAGTCATGACGGAAGCTAACTCCTCCTTCAGGAAGAGCGCCAGCATGAACAACCTCTCACAGTACGACGCGGAGTTCAACGCCGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCATAGATTGTTCCTGTTAGGGTTACACAAAGTCGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAAACTCGCACGCCTACTCAGGTCGCTAGTCACGCTCAGAAGTACTTTCTCCGCCGCCACAACCAGAATCGCCGCCGCCGGAGATCTAGCCTCTTCGACATCACCACCGATACGGTGATGGAATCTTCTACTATAATGGAAGAAGAACAAGTTCCGCCAGAGACGGTGGCGGCGCCTCTCCCCGCCGCATATCCGCCGTCGCATTACGGGGCTTTTGCCGGCGCGGGTTTTCCGATAGCTCCGGTGGTGTTGCCGGTGAGTGGCGAGAGACTAACCAAGCCGATCAGGCCGACGCCGATTTTGCCAGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACTTGAAAGAGAAAGCTTCTCCGACAAATCTCATTGAGCCTTTGCCGTTGTCGTTGAATCTGCCATCGCCGACGCCGCGGTCTCAGGATCAGTCGTCGGCGAGTAGTGGGCACTCGTCACCGTCGTCGTCGTCATCGGCGGCAGCTTTTCAGGCTATGTCTGCAGCGAAGTTCGGCAGCGGCGGGGATAGTATCATCAGCGTTGCTTGA 903 0.5803 MSRTCSQCGNNGHNSRTCTDGGAAGSPRENGIMLFGVRVMTEANSSFRKSASMNNLSQYDAEFNAADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVPPETVAAPLPAAYPPSHYGAFAGAGFPIAPVVLPVSGERLTKPIRPTPILPVPPSSKMANLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSSASSGHSSPSSSSSAAAFQAMSAAKFGSGGDSIISVA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00350 300 PANTHER TRANSCRIPTION FACTOR KUA1 4 297 - -
Gma01g00350 300 MobiDBLite consensus disorder prediction 238 277 - -
Gma01g00350 300 MobiDBLite consensus disorder prediction 1 25 - -
Gma01g00350 300 Gene3D - 89 140 - -
Gma01g00350 300 ProSiteProfiles SANT domain profile. 86 139 IPR017884 -
Gma01g00350 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Gma01g00350 300 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Gma01g00350 300 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 4 297 - -
Gma01g00350 300 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Gma01g00350 300 SUPERFAMILY Homeodomain-like 85 138 IPR009057 -
Gma01g00350 300 CDD SANT 90 135 IPR001005 -
Gma01g00350 300 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Gma01g00350 300 SMART sant 87 137 IPR001005 -
Gma01g00350 300 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g00350 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 137 IPR006447 GO:0003677
Gma01g00350 300 MobiDBLite consensus disorder prediction 253 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00350 Gma-Chr1 4196298 4199133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma01g00350 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00350 - - gmx:780554 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00350 01 4196298 4199133 Gma01g00350 01 4196298 4199133 ECH
Gma01g00350 01 4196298 4199133 Gma02g00238 02 2388525 2390918 GST
Gma01g00350 01 4196298 4199133 Gma18g01172 18 17722571 17725065 PCT
Gma18g01172 18 17722571 17725065 Gma01g00350 01 4196298 4199133 PCT