Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00347 ATGAAGAGGTCCAGAGATGAAGTTCTCACGAGTTGTTCTCAATTGAAACGGCCTGTGTTGTCTTCACGAGGAGAAGCGTCTGGGCAACCGcagatgatgaatggaggtgctcagaaactgacaactaatgatgcccttgcatatctcaaggcagtgaaggatatatttcaagataagagggacaagtatgatgactttttggaggttatgaaagatttcaaggctcaaagaattgatactgtgggtgtcattgcaagagtgaaggaactgtttaaaggccacagagatcttatattgggatttaacaccttcttgcctaagggttacgaaatcacacttccatcagaggatgaTCAACCTGCCCCAAAGAAACCCGTTGAATTTGAAGAGGCTATAAATTTTGTGAACAAGATAAAGactcgttttcaaggtgatgatcatgtgtataaatcatttcttgacatattgaatatgtacagaaaggaagacaaatctattactgaggtctaccaggaggttgctgctatttttcaggaccaccctgatcttcttgatgagtttactcattttctTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGGAATTCTATGCTTCGCGATAGGAGCTCTGCAATGCCAACAATACGACAATTGCACGTTGAAAAGCGAGAACGGACCATTGTTTCACATGGTGATCATGACCCCAGTGTTGATCGTCCTGACCCAGATCATGACAGGGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGCTCGAGATAGGGAGCGATTCTCTCACAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTGTGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGTGAAAAGGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTGCATATCTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATAAAGGTTGAAGACAAGGATAGAGATCAGGATAGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGCGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGTCTCTTACCGAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCTGAGGTGTTGAATGATTACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAACCTGAGGTGTATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGGTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACTAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGGCGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTATATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACTGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTATTCCTTCTCGGCCCCAGTGTGCAGAGGATACAGAAGATGTTGTCAAGGTTAAGAATAATTGTGTCCTAAATGACACAGCAACTGTTGCTGAGAGTGACTGTAGCCCTGTTGTGGGTGCTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTGAGGATAGGTATCTTGATGACCATGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACCATCAGGATTTAACAATAAGCAAGACCAGTCCAGCGAACGGTTAGTGAATGCAAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCGGGACTCACTGCCACTCCAACAAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAGACTGGGTACATCAACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAATGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTTGCATTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAAGATGGTGGTGTGAGTCGGCAATACCAAAATAGGCACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCATCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTGTTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAATAAGCTTTTACAACTATATGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATCGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGACGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAGGTGACTGCTGTGTCAATGGACCCTAATTTTTCAACCTATCTACACTATGACTTCCTGTCTGTCGTCTCTGACAAAAAACAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGTAGATATGCCAGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTCTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATAAGAAGGAAAAGAAGAGCCTTGCGTCTGAAGAGTTCAGGTGCTCACGAACAGGCACAGTCTTCAAACATTTGTTCAAGCAGAGTACAACGATTCCGCAATTTGTTTTCCATTACATGA 4290 0.3709 MKRSRDEVLTSCSQLKRPVLSSRGEASGQPQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDDQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKEDKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSMLRDRSSAMPTIRQLHVEKRERTIVSHGDHDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDYEHDGARDRERFSHKRNRKAEDSGAEPLLDADENFGVRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQIKVEDKDRDQDRDRDRYRDDGMKERDREFRERDKSTAIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCIPSRPQCAEDTEDVVKVKNNCVLNDTATVAESDCSPVVGATIMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVEDRYLDDHALRKTETLGSNTQHGKMNSIAFTPDEPSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDIPSSEGGDSTRLGTSTNGAITGGTKVHRYQEESVRPFKNEREEGELSPNGDFEEDNFAFYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESHHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVPPMLHEKDRNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHYDFLSVVSDKKQKSGIFLKRNKRRYASNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRIRRKRRALRLKSSGAHEQAQSSNICSSRVQRFRNLFSIT 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00347 1429 Pfam Sin3 family co-repressor 501 591 IPR013194 -
Gma01g00347 1429 Gene3D Paired amphipathic helix 332 404 IPR036600 GO:0006355
Gma01g00347 1429 MobiDBLite consensus disorder prediction 1043 1057 - -
Gma01g00347 1429 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Gma01g00347 1429 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Gma01g00347 1429 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Gma01g00347 1429 SMART hdac_interact2seq4b 498 598 IPR013194 -
Gma01g00347 1429 MobiDBLite consensus disorder prediction 1010 1095 - -
Gma01g00347 1429 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Gma01g00347 1429 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Gma01g00347 1429 MobiDBLite consensus disorder prediction 1011 1035 - -
Gma01g00347 1429 MobiDBLite consensus disorder prediction 1070 1095 - -
Gma01g00347 1429 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Gma01g00347 1429 Coils Coil 253 276 - -
Gma01g00347 1429 MobiDBLite consensus disorder prediction 947 963 - -
Gma01g00347 1429 MobiDBLite consensus disorder prediction 923 998 - -
Gma01g00347 1429 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Gma01g00347 1429 MobiDBLite consensus disorder prediction 232 315 - -
Gma01g00347 1429 MobiDBLite consensus disorder prediction 232 310 - -
Gma01g00347 1429 Pfam C-terminal domain of Sin3a protein 1142 1388 IPR031693 -
Gma01g00347 1429 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Gma01g00347 1429 PANTHER SIN3B-RELATED 470 1399 IPR039774 GO:0003714
Gma01g00347 1429 PANTHER SIN3B-RELATED 14 438 IPR039774 GO:0003714
Gma01g00347 1429 MobiDBLite consensus disorder prediction 968 986 - -
Gma01g00347 1429 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Gma01g00347 1429 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Gma01g00347 1429 SUPERFAMILY PAH2 domain 332 400 IPR036600 GO:0006355
Gma01g00347 1429 MobiDBLite consensus disorder prediction 433 461 - -
Gma01g00347 1429 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 470 1399 - -
Gma01g00347 1429 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 14 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00347 Gma-Chr1 4110764 4123066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00347 29 143 WRKY Transcription Factor Family AT4G12020 50.427 2.37e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma01g00347 Sin3a_C 4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00347 K11644 - gmx:100811928 2599.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00347 01 4110764 4123066 Gma01g00347 01 4110764 4123066 ECH
Gma01g00347 01 4110764 4123066 Gma02g00242 02 2436950 2450060 GST
Gma01g00347 01 4110764 4123066 Gma18g01179 18 18095949 18108109 PCT
Gma18g01179 18 18095949 18108109 Gma01g00347 01 4110764 4123066 PCT