Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00340 ATGGACACGGACGGTGTCGTTTCGTTCAACCATGTCTCGCCGGAGGATTCCCACGAGGTTCATGTCTTGGCCGTCGACGACAGCCTCGTTGATCGAAAGGTCATTGAGCGCTTGCTCAAAATCTCAGCTTGTAAAGTTACGGCTGTGGATAGTGGAATCAGAGCACTGCAATTTCTGGGGCTGGATGAGCAGAGAAGGACCTCTGAATCTGATGGTTTTGTCCCGGATTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAAATGACCGGTTACGAGTTGCTCAAGAAAATCAAGGAATCGACCATGTTCAGAGAAATTCCAGTAGTGATCATGTCTTCCGAAAACATTTTGCCGCGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAATTATCTGATGTAAAACGGTTAAAGGGTTACTTGACACCAAAAGAGGTTATTAAGGTTGACAGAAGAAGTGATGGTTATGTTAACGGTGGCTGCAAAGGTGGTGATGGTGGTGGTGGTGGTGGTGTGGAGATAAACAACAACAAAAGGAAGCTGGAAGAGCAAGACACATCTGACGTGTCAACATCTCCACCGTCCACTTCTACACTTTCATCATCACCCTCCGTTTCTTCACCATCACCGTCATCTTCTCCTACCTCTTCACCCAGCGTGCTTGCTTCTCCGATCAGACGGCTTAAAATGACCAGCACCGATTGA 735 0.4721 MDTDGVVSFNHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRRTSESDGFVPDLKVDLIITDYCMPEMTGYELLKKIKESTMFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYLTPKEVIKVDRRSDGYVNGGCKGGDGGGGGGVEINNNKRKLEEQDTSDVSTSPPSTSTLSSSPSVSSPSPSSSPTSSPSVLASPIRRLKMTSTD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00340 244 MobiDBLite consensus disorder prediction 197 244 - -
Gma01g00340 244 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 243 - -
Gma01g00340 244 CDD REC_typeA_ARR 22 147 - -
Gma01g00340 244 MobiDBLite consensus disorder prediction 167 244 - -
Gma01g00340 244 Gene3D - 20 167 - -
Gma01g00340 244 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160
Gma01g00340 244 SMART REC_2 20 151 IPR001789 GO:0000160
Gma01g00340 244 Pfam Response regulator receiver domain 22 144 IPR001789 GO:0000160
Gma01g00340 244 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 243 IPR045279 GO:0009736
Gma01g00340 244 SUPERFAMILY CheY-like 20 146 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00340 Gma-Chr1 4052404 4053588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00340 14 236 Response Regulator Gene Family AT1G59940 56.466 2.30e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma01g00340 Response_reg 1.8e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00340 K14492 - gmx:100779833 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00340 01 4052404 4053588 Gma01g00340 01 4052404 4053588 ECH
Gma01g00340 01 4052404 4053588 Gma02g00249 02 2505338 2506889 GST
Gma01g00340 01 4052404 4053588 Gma18g01184 18 18221286 18222709 PCT
Gma18g01184 18 18221286 18222709 Gma01g00340 01 4052404 4053588 PCT