Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00337 ATGAGCACTTCTCATCAACAACGTTATCTCCTCTTCGCTTTCACTACGTTAATAGTTTTCTTCAGCTTCAACACTACACCAGTTTCGGCTCGTTTGTTCCCCAACGTTTCCTCCATCCCAAGGTGGAACACATCCCACGCGCCACCTGATAGCGCGTGGAACGCGTATCGCAATTTCACTGGGTGCCGCCCGGGAAAAACATATAACGGTCTTTCGAATCTGAAAAACTACTTTCATTATTTTGGCTACATCTCCAACGTGTCCTCGAAGTCGTCGAATTTTAGCGACGATTTCGATGATGCGTTGGAGGCAGCCGTTAGAGCCTACCAGAAGAACTTCAACCTCAACATCACAGGGGAGCTCGACGACCCCACGATGAACCAAATCGTCAAGCCACGCTGCGGCGTGGCTGACATCATCAACGGAACCACAACAATGAACTCCGGCAAGACAAACACCACGGATTCACCGACGTTCCACACGGTAGCGCATTATTCTTTCTTTGACGGCCAGCCGCGGTGGCCGGTGGGGACACAAGAACTAACCTACGCCTTCGATCCCGATAACGCTCTCGACGACGTGATTAAGACCGTGTTTGGCAACGCGTTTAGCAGATGGTCAGAGGTGACCACGATTTCTTTCCGCGAAACGGCGTCGTATGTGGCTGCGGACATAAGAATAGGGTTTTACGGTGGGGACCACGGCGACGGCGAACCTTTTGATGGCGTGTTGGGGACGTTGGCGCACGCGTTCTCGCCGACGAACGGGATGTTCCACCTGGACTCGGCGGAGGACTGGGTGGCCTCCGGCGACGTGACGAAGGCGTCGCTGTCGAACGCGGTGGATCTTGAATCCGTGGCGGTGCATGAGATTGGGCACTTGCTAGGGTTAGGGCACTCTTCGGTTGAAGATGCTATTATGTACCCTACGATTACCGCGAGGACGAGGAAGGTGGAGCTCAACGAAGATGATATACAAGGGATTCAGGTTCTCTACGGTTCCAACCCTAATTTCACTGGGACTCCTGCTACCTCTTCGCGTGAGAGCGACACGAGCGATGGTGGTGTTCGGCACGTGGGAGCCACGTGCGGTGTGTTCTTCTCTCTTTTGTTCTTCGTTGTGTTTGGATTGCACGTGTGA 1140 0.5342 MSTSHQQRYLLFAFTTLIVFFSFNTTPVSARLFPNVSSIPRWNTSHAPPDSAWNAYRNFTGCRPGKTYNGLSNLKNYFHYFGYISNVSSKSSNFSDDFDDALEAAVRAYQKNFNLNITGELDDPTMNQIVKPRCGVADIINGTTTMNSGKTNTTDSPTFHTVAHYSFFDGQPRWPVGTQELTYAFDPDNALDDVIKTVFGNAFSRWSEVTTISFRETASYVAADIRIGFYGGDHGDGEPFDGVLGTLAHAFSPTNGMFHLDSAEDWVASGDVTKASLSNAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTITARTRKVELNEDDIQGIQVLYGSNPNFTGTPATSSRESDTSDGGVRHVGATCGVFFSLLFFVVFGLHV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00337 379 Pfam Matrixin 178 333 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gma01g00337 379 SUPERFAMILY PGBD-like 60 139 IPR036365 -
Gma01g00337 379 CDD ZnMc_MMP 173 333 IPR033739 GO:0008237|GO:0008270
Gma01g00337 379 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 168 337 - -
Gma01g00337 379 PANTHER MATRIX METALLOPROTEINASE 8 379 - -
Gma01g00337 379 SMART col_5 170 334 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gma01g00337 379 Pfam Putative peptidoglycan binding domain 70 128 IPR002477 -
Gma01g00337 379 PANTHER MATRIX METALLOPROTEINASE 8 379 - -
Gma01g00337 379 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma01g00337 379 PRINTS Matrixin signature 199 214 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma01g00337 379 PRINTS Matrixin signature 223 251 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma01g00337 379 PRINTS Matrixin signature 286 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma01g00337 379 PRINTS Matrixin signature 320 333 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma01g00337 379 Gene3D Collagenase (Catalytic Domain) 61 339 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00337 Gma-Chr1 4012892 4014373 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00337 - - gmx:100803218 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00337 01 4012892 4014373 Gma01g00337 01 4012892 4014373 ECH
Gma01g00337 01 4012892 4014373 Gma02g01100 02 11997753 12004220 GST