Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00334 ATGGAAAAGGATATCATTCTTCTTTCTCCAACATGGGATGGTGACAATGGCAATTCCACTGAGAAAAGGCTCAGGCTATTTGGTTTTGAGCTAAACCCTTCTAAAGATGGTTATGCCAAAGAATCTGGTGAAGGAGATGAAAGTGTGAACTCCTCTAACTCAGTTTCTTCTGGAGGAGACAAAACTGTGCAAGAGAAACCCTCTGCCAAAGACTCTGATGAGAGAAAGTTTGAGTGCCAATATTGTTACAAGGAATTTGCAAACTCACAAGCCCTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCCATAAACCGCTACCTACAACACCCTTTCCAATCCAAGCATGGCTTTGCTTACCCTTCTGATACTCCTTGGTTCTATGACCCCTCTACCTATAATAACTCTGAGTTCACCCTTAGTGAAGAACCTCAGATTAGCTTCAATTCAAATGTTTTAGATGCCAACTTTTCTTGTGACCAGAAATCTAGTTGGTATTCTCTTGCATCTCACCCTTCTAATTCCCAACAAGATACTTGCATGTTTACTTTCTCCAATGCAAGTAATAATAGTCCTTTCATCTTCAAGCCTTGCCACTTCCCTGCTTCAAATCAGAGCCATAAAAGTAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGCAGTCAAATACAAGAAGTTCCTTAAGAAGGATGTAA 726 0.4091 MEKDIILLSPTWDGDNGNSTEKRLRLFGFELNPSKDGYAKESGEGDESVNSSNSVSSGGDKTVQEKPSAKDSDERKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQSKHGFAYPSDTPWFYDPSTYNNSEFTLSEEPQISFNSNVLDANFSCDQKSSWYSLASHPSNSQQDTCMFTFSNASNNSPFIFKPCHFPASNQSHKSKALDLQLGLNLQSNTRSSLRRM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00334 241 PANTHER ZINC FINGER PROTEIN 5 18 231 - -
Gma01g00334 241 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Gma01g00334 241 MobiDBLite consensus disorder prediction 45 63 - -
Gma01g00334 241 MobiDBLite consensus disorder prediction 37 72 - -
Gma01g00334 241 Pfam C2H2-type zinc finger 77 102 - -
Gma01g00334 241 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Gma01g00334 241 PANTHER ZINC FINGER PROTEIN 5 18 231 IPR044299 GO:0010090
Gma01g00334 241 Gene3D Classic Zinc Finger 51 127 - -
Gma01g00334 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00334 Gma-Chr1 3925464 3926687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00334 19 140 C2H2 Transcription Factor Family AT1G68360 35.032 1.78e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g00334 zf-C2H2_6 6.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00334 - - gmx:100527006 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00334 01 3925464 3926687 Gma01g00334 01 3925464 3926687 ECH
Gma01g00334 01 3925464 3926687 Gma02g00259 02 2723615 2724707 GST