Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00333 ATGCCGGGGCACCGCTCGAAATCGGAGAAGCATGGCGGCGGCGGCGAGAAGCCGCTCCGGCGGGACCCCTACGAGGTCCTCGGCGTCTCGCGCAACTCCACGGATCAGGAAATCAAAACCGCCTACCGCAAAATGGCGCTCAAATATCATCCGGACAAGAATGCAAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGCTACCTTCTCTTATAATATCCTGTCAGATCCTGATAAACGGCGTCAGTACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTAGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTTTAGTGACCATTCGACCACTTCCATTGGGACATAATATAGCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAAGCTGGTTTTGTTTGTCGAGTACAATCGCCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAACAGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACGTCATTTTTCAGAAAGCTGGATGCGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCCCTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGCTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCACAATTCTCAGATATGACAAACAGATATGCACATGAAATGCAAGCAATTGATGAGCTACTGAAGAATAGAAATGAAATACAGGCATCATACACCAGTGCTCCTTTAAAACGGACTACAAGTAGGAGCAGAAGTAAAAATTCTGCCAAGGAGGCAAAAGAAGATGGCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1233 0.4242 MPGHRSKSEKHGGGGEKPLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEATFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNIAKRVEKQCAHFYSVTITEEEAQAGFVCRVQSPDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDAFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSDMTNRYAHEMQAIDELLKNRNEIQASYTSAPLKRTTSRSRSKNSAKEAKEDGQAKEKRSTRERPKKKKWYNLHLRVDKRKAC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00333 410 Pfam DnaJ domain 22 84 IPR001623 -
Gma01g00333 410 CDD DnaJ 22 76 IPR001623 -
Gma01g00333 410 Gene3D DnaJ domain 14 105 IPR036869 -
Gma01g00333 410 SMART dnaj_3 21 79 IPR001623 -
Gma01g00333 410 PRINTS DnaJ domain signature 24 42 IPR001623 -
Gma01g00333 410 PRINTS DnaJ domain signature 42 57 IPR001623 -
Gma01g00333 410 PRINTS DnaJ domain signature 59 79 IPR001623 -
Gma01g00333 410 PRINTS DnaJ domain signature 79 98 IPR001623 -
Gma01g00333 410 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
Gma01g00333 410 MobiDBLite consensus disorder prediction 1 24 - -
Gma01g00333 410 Coils Coil 292 319 - -
Gma01g00333 410 MobiDBLite consensus disorder prediction 355 398 - -
Gma01g00333 410 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Gma01g00333 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 409 - -
Gma01g00333 410 SUPERFAMILY Chaperone J-domain 21 91 IPR036869 -
Gma01g00333 410 MobiDBLite consensus disorder prediction 1 32 - -
Gma01g00333 410 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 409 - -
Gma01g00333 410 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00333 Gma-Chr1 3898132 3902666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00333 20 85 C2H2 Transcription Factor Family AT1G74250 42.254 1.16e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00333 - - gmx:100791554 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00333 01 3898132 3902666 Gma01g00333 01 3898132 3902666 ECH
Gma01g00333 01 3898132 3902666 Gma02g00260 02 2744521 2749244 GST