Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00300 ATGTATAGGGTTCACTCTAAAATCCTTAAAAGCAATGGTGCTATCACCAACCCCCCTATTTTTGCTCGATATTCTTCTTCTTCTTCTTCACCCTCAGTGCCTTATGTTTCTAACTACCAGAAACAAACAGCTCCATCCCCAACTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTGTCATCATAGTAATTTTAGCAGTGGTGTTTTTCATCTTGGGTTTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCAAAGGTCTTCCTCCAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCTGAATCAGATGCTTACCAGAGGCAGTTACAGCAGCTCTTCCATCTTCATGACTCAGGTCTGGATCAGGCTTTCATAGATGCTCTCCCAGTCTTTTTTTACAAAGAGATAATTGGCTTGAAGGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTCAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGCTGTCCAATTCAACTTGCCCTCTTTGTAGAGGGACTCTCTATTCGCCAGGCTTTGCCTTTGAGAACTCAGTTTTTGACTTTGAAAGTCAACTTAAGGAAGATGGGGTATCAGGAAGTGGTGGAGTTGGTTCTGTTAACAAAACTACAGAAAGTTACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAATTTTAGAAGCACTAATAATCAAGATGTGGTGGTGGAGAGAGGTGAAGGAGAGAGTAGTAGTGTTAATTTGGATGTGAGGAGATGCTATTCAATGGGGTCTTTTCAGTATATTGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTAGCAGTGGCAGCATGAGACAACTACTGAAGGGAAGAGCAGCCACAAATGGAAGTTCTTTCCTTGATGGAGATGCTGTTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGCTCTAGGAAAGATAAGTTGACAGGCTCATCAGATGCTCATTTCCATAACTCTACTGTCACTTCGACTTTGCCATGGATGAATAAAGTCAGAGGTACTTGA 1131 0.4156 MYRVHSKILKSNGAITNPPIFARYSSSSSSPSVPYVSNYQKQTAPSPTSSSGNRISPAILVIIVILAVVFFILGFLHLLVRFLIKQRSSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSVFDFESQLKEDGVSGSGGVGSVNKTTESYIVNGKRVFSVRLGNFRSTNNQDVVVERGEGESSSVNLDVRRCYSMGSFQYIVADSDLRVALGPSSGSMRQLLKGRAATNGSSFLDGDAVEGKKINIARKGESFSVSKIWQCSRKDKLTGSSDAHFHNSTVTSTLPWMNKVRGT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00300 376 MobiDBLite consensus disorder prediction 26 52 - -
Gma01g00300 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 370 - -
Gma01g00300 376 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 370 - -
Gma01g00300 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Gma01g00300 376 CDD RING-H2_PA-TM-RING 148 191 - -
Gma01g00300 376 SMART ring_2 149 190 IPR001841 -
Gma01g00300 376 Pfam Ring finger domain 148 191 IPR001841 -
Gma01g00300 376 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Gma01g00300 376 SUPERFAMILY RING/U-box 128 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00300 Gma-Chr1 3444469 3445599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00300 74 354 C3H Transcription Factor Family AT2G18650 40.952 1.03e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00300 - - gmx:100805154 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00300 01 3444469 3445599 Gma02g00295 02 3086435 3088451 GST
Gma01g00300 01 3444469 3445599 Gma18g01224 18 19555538 19556692 PCT
Gma18g01224 18 19555538 19556692 Gma01g00300 01 3444469 3445599 PCT