Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00297 ATGGCATCAAGATCATATGTTAATCTACTAGACTTAGCTGGAGGTTTACTGGATATTCCTCACACGCCAAAAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGATCTGGATGTTTGTGGTAGATATGATGGGGATTCTGATGTTAGCTCTTCTGGTTATCGGGAGCGGAAAATCCTTGTGGCAAACATGTTGCCATTGCAGGCCAAAAGAGATATTCAAACTGGTAAATGGTGTTTCAGTTTAGATGAGGATTCTATTCTGTTACAATTAAAAGATGGTTTTTCTTGTGACACTGAGGTGATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCTCATGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTTAATTGCATACCTACCTTTCTACCCCATGATGTCCAGAAGAAGTTTTATTATGGCTTTTGCAAACAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCATGGTGACCGGTTTGATCGCTCGTTGTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCGGACAAGGTTATGGAAATAATCAATCCTGATGACGATTTTGTTTGGGTTCAAGACTATCACTTGATGGTCTTGCCGACATTTCTGAGGAAGCGGTATAATCGCGTGAAGCTTGGATTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCAGTAAGGGATGAAATTCTGAGGGGATTGTTGAATTCTGATTTAATTGGTTTCCATACATTTGATTATGCTCGCCACTTCCTTTCTTGTTGCAAAAGAATGCTAGGTCTTGACTATGAATCTAAACGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTCTTCCTGTAGGCATTCATATGGGCAGGCTTGAATCTGTATTAAATCTTCAATCTACATCAGCTAAATTGAAAGAGATTCGGGAAGAGTTTAAGGGTAGGAAGGTGATTCTTGGTGTTGATGACATGGATATCTTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTACTGCAGCAGAATCAAGATTTGAAGGGCAAAGTTGTCCTAGTACAGATTGTGAATCCTGCTAGGAGTTCAGGCAAGGATGTTCAGGAAGCAAAGAAGGAAACAAATTTAATTGCCCAGAGGATTAATGATACTTTTGGTTCAAACAATTATCAGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCCTACAAATACATTGTCTGTAGACAAGGAACTGCACTGATGGACAAAGCTTTGACTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTTTAAGTGGAGCAATCAGGGTCAATCCCTGGAACATAGATGCTGTGGCTGATGCTCTGTATTCAGCTGTTACTATGAATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACCGGTACATCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTGTGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGATGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTCAGAAAATTGTCTGTTGATCACATTGTTTCAGCTTACAAAAGAACCGGTAGAAGAGCCATATTTCTTGATTATGATGGTACTATCGTACCAAAATCTTCCATAAATAAGACCCCCAGCCCTGAAGTCATATCCGTGCTAAATGATATGTGTAATGATCCTAAAAATACTGTGTTCATTGTGAGTGGAAGGGGAAGAGATTCTTTAAGTAAGTGGTTTACTTCATGCAAAATGATTGGACTTGCAGCCGAACATGGATACTTTCTAAGGTGGAGTAAAGATTCTGAATGGGAAACCAGTCCCTTGTCTCCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAGTTGTATACAGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTCTGGCATCATCAATATGCAGACCCCGACTTTGGCTCATGCCAAGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTCGCTAATGAACCTGCAGTTGTTACCAGGGGCCGGCATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGGCTTGGTAGCTGAAAAGGTTCTTTCCAATATGGTTAATGATGGTAATCCACCAGATTTTGTGATGTGTGTGGGAGATGACATTTCCGATGAAGACATGTTTGAGAGCATATTAAGGACAGTTTCATGCCCTTCATTGCCAGTAGTTCCAGAGATCTTTGCCTGCACTGTAGGTCAGAAACCTAGCAAGGCCAAATATTATCTTGATGACCCTGCTGATGTCATGAAGTTGCTTCAAGGTCTTGGTGCTTCATCTAAGCCAAAGCCAAGGCATCTAGCACAATTCCAAGTTTCTTTTGAGAGCACGGTTTGA 2583 0.4119 MASRSYVNLLDLAGGLLDIPHTPKTIPRIMTVPGVISDLDVCGRYDGDSDVSSSGYRERKILVANMLPLQAKRDIQTGKWCFSLDEDSILLQLKDGFSCDTEVIYVGSLKVEIDAHEQEEVAQKLLEDFNCIPTFLPHDVQKKFYYGFCKQQLWPLFHYMLPMFPDHGDRFDRSLWQAYVSANKIFADKVMEIINPDDDFVWVQDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLQSTSAKLKEIREEFKGRKVILGVDDMDIFKGISLKLLAVEQLLQQNQDLKGKVVLVQIVNPARSSGKDVQEAKKETNLIAQRINDTFGSNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTALMDKALTRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADALYSAVTMNDSEKQLRHEKHYRYISSHDVAYWARSFVQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGRRAIFLDYDGTIVPKSSINKTPSPEVISVLNDMCNDPKNTVFIVSGRGRDSLSKWFTSCKMIGLAAEHGYFLRWSKDSEWETSPLSPDLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQYADPDFGSCQAKELLNHLESVLANEPAVVTRGRHIVEVKPQGLNKGLVAEKVLSNMVNDGNPPDFVMCVGDDISDEDMFESILRTVSCPSLPVVPEIFACTVGQKPSKAKYYLDDPADVMKLLQGLGASSKPKPRHLAQFQVSFESTV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00297 860 Gene3D Glycogen Phosphorylase B; 313 528 - -
Gma01g00297 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 851 - -
Gma01g00297 860 TIGRFAM T6PP: trehalose-phosphatase 590 836 IPR003337 GO:0003824|GO:0005992
Gma01g00297 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Gma01g00297 860 CDD HAD_TPP 592 833 - -
Gma01g00297 860 Gene3D - 590 706 IPR023214 -
Gma01g00297 860 Gene3D - 720 850 IPR023214 -
Gma01g00297 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Gma01g00297 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Gma01g00297 860 Gene3D Glycogen Phosphorylase B; 53 312 - -
Gma01g00297 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Gma01g00297 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Gma01g00297 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Gma01g00297 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00297 Gma-Chr1 3394153 3400151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00297 1 860 Trehalose Biosynthesis Gene Families AT1G23870 73.157 0.0 1338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00297 K16055 - gmx:100795250 1736.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00297 01 3394153 3400151 Gma01g00297 01 3394153 3400151 ECH
Gma01g00297 01 3394153 3400151 Gma02g00298 02 3122356 3127628 GST
Gma01g00297 01 3394153 3400151 Gma18g01231 18 19804934 19807727 PCT
Gma18g01231 18 19804934 19807727 Gma01g00297 01 3394153 3400151 PCT