Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00274 ATGATGATTGATTATGAGTGTCCATCTTCAACTATAAATGCTTCCTTGTGTCAAAAGAACTACAATTTTATCTCTCTATCTCTTCTTTCTCTTCCTCTATCACATACACACTCTCTCACTTACAAGTTACAAATTCAGACAGATATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTAGAATGTGGATTCTGTGCCACCATTTTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAATGGTGGTGACAGTAAAATGCGGACACTGCACAAGCGTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAAGTAGTTCAGAACAAGATGCTAACAAGACTTTGAAGAGACATAATGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGCCATTCCAATGAGTAATGTTGTCAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCCCACAGGGAAGCTTTTAGTACAGCAGCAAAAAACTGGGCCAATTTCCCCCCAACTCAGTGCAAAGAAGATGAAGAGAGCTGTAGCAGCCAGACAGATCAACATGTGGATCTTGACTCCCAAGTGGACCCTAATGCTGTGGTCAATGAAGAAGAAGGTCAAGGTTTACGTGGAAGAAAGGTCCCAAAGAATTCCATATTGGAAAGGACACCGTTTGAATGA 795 0.4088 MMIDYECPSSTINASLCQKNYNFISLSLLSLPLSHTHSLTYKLQIQTDMSTLNHLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLEPKESSSEQDANKTLKRHNASMMTYSDCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNWANFPPTQCKEDEESCSSQTDQHVDLDSQVDPNAVVNEEEGQGLRGRKVPKNSILERTPFE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00274 264 SUPERFAMILY HMG-box 157 211 IPR036910 -
Gma01g00274 264 Pfam YABBY protein 59 211 IPR006780 GO:0007275
Gma01g00274 264 Gene3D High mobility group box domain 158 227 IPR036910 -
Gma01g00274 264 MobiDBLite consensus disorder prediction 211 264 - -
Gma01g00274 264 PANTHER AXIAL REGULATOR YABBY 4 49 232 - -
Gma01g00274 264 PANTHER PROTEIN YABBY 6-RELATED 49 232 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00274 Gma-Chr1 3152779 3155078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00274 32 264 C2C2-YABBY Transcription Factor Family AT1G23420 53.878 6.20e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gma01g00274 YABBY 1.6e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00274 K25796 - gmx:100806755 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00274 01 3152779 3155078 Gma01g00274 01 3152779 3155078 ECH
Gma01g00274 01 3152779 3155078 Gma18g01270 18 21149173 21151726 PCT
Gma18g01270 18 21149173 21151726 Gma01g00274 01 3152779 3155078 PCT