Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00263 ATGAAGAAACTAGTCTCTCTCATCTCTTTTCAATGCAACTTTTTCCTTCTCATCAAGTTACTACTACTATCGAAGACTATAATAGCAGAACCAAGGGCCAAGACAGTCCTAATAACATGTGGCCATGAACTAGAGCACAACACTACTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGAAGATCAGTGATGAGATGCGCAAAACTGGCTTTGGCACCGCAATTGTAGGGACTGGACCCGATACTAACTATGGCCTTGCCCAGTGTTATGGAGATCTTTCATTACTTGACTGTGTATTATGCTATGCTGAGGCACGCACGGTTCTTCCTCAGTGCTTCCCTTATAATTCTGGTCGCATTTTCCTTGACGGTTGCTTCATGAGAGCTGAGAATTATAGTTTCTTTAATGAGTATACGGGACCGGGAGACAGAGCTGTATGTGGGAACACAACAAGGAAGAACTCAAGTTTTCACGCAGCGGCAATGCAGGCAGTTTTGAGAGCAGTTCAAGATGCACCTAACAACAAAGGATATGCCAAAGGGAATGTTGCTGTAGCAGGAACAACTAACCAATCTGCTTATGTTCTGGCCGATTGTTGGAGGACTTTGGACAAAAGCTCTTGCAAAGCATGTCTTGAGAATGCATCCTCTTCCATATTGGGATGCTTGCCTTGGCAAGAAGGGCGAGCGCTGAACACCGGGTGTTTCATGAGGTACTCAGACACAGATTTTCTTAACAAAGAGCAGGAAAATGGGAGTTCAAGAGGTAATGTGGTAGTGATAGTGATTGCAGTAGTCAGTTCGGTGACTGTTTTGGTGGTTGGAGTAACTATTGGAGTTTATATATGGAAACAAAGATACATTCAAAAGAAACGAAGAGGTTCAAATGATGCAAAAAAGTTGGCAAAAACACTTCAGAACAATAACTTGAACTTCAAGTACTCTACATTGGACAAGGCCACTGAATCTTTTCATGAGAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTGTGAAGAGATTATTTTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTAGCGTGGagcacaagaatctagtcagactgttaggatgcagttgttcaggacctgaaagcctgcttgtatatgaatttctacccaaccgaagtcttgaccgctacatttttgataaaaacaagggcaaagaattgaactgggaaaatagatatgaaattatcatcgggacagctgaaggattggtttatctacatgagaactccaaaacaagaataattcacagagatataaaagccagcaacatcttattggatgcaaagcttcgtgctaaaattgcagattttggtttggccaggtcctttcaagaggaccagagccacataagtacagctattgcaggaactttggggtatatggctcctgaatatctagctcatggtcaattaacagaaaaggcagacgtatatagttttggagtgttgctgctagagatagtcactgctagacagaacaacaggagcaAAGCATCAGAATATTCAGACAGCTTAGTTACAGTGGCATGGAAGCATTTTCAGGCAGGGACATCTGAACAATTATTTGATCCAAATCTAGACTTGCAGGAAGACCACAATAGCAATGTTAACGTTAAGGATGAGATTATAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTTCTTTACGACCAAGCATGTCAAAGGCACTACAGATGCTAACAAAGAAGGAGGAGCATCTGGATGCTCCCTCTAATCCACCCTTCCTAGATGAGAGTACCATGGAACTTCATGACACAAGTGGTGACCCATTTTATCCTCTTACTGCACCTGATTCAATTGCCACTATGTCCCATAGCTCTTTTTATCCCAGGTGA 1959 0.3221 MKKLVSLISFQCNFFLLIKLLLLSKTIIAEPRAKTVLITCGHELEHNTTIFVPNFVATMEKISDEMRKTGFGTAIVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIFLDGCFMRAENYSFFNEYTGPGDRAVCGNTTRKNSSFHAAAMQAVLRAVQDAPNNKGYAKGNVAVAGTTNQSAYVLADCWRTLDKSSCKACLENASSSILGCLPWQEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVVIVIAVVSSVTVLVVGVTIGVYIWKQRYIQKKRRGSNDAKKLAKTLQNNNLNFKYSTLDKATESFHENNKLGQGGFGTVYKGVLADGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNRSLDRYIFDKNKGKELNWENRYEIIIGTAEGLVYLHENSKTRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDQSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTARQNNRSKASEYSDSLVTVAWKHFQAGTSEQLFDPNLDLQEDHNSNVNVKDEIIRVVHIGLLCTQEVPSLRPSMSKALQMLTKKEEHLDAPSNPPFLDESTMELHDTSGDPFYPLTAPDSIATMSHSSFYPR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00263 652 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Gma01g00263 652 Pfam Protein tyrosine and serine/threonine kinase 326 597 IPR001245 GO:0004672|GO:0006468
Gma01g00263 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 633 - -
Gma01g00263 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gma01g00263 652 CDD STKc_IRAK 330 603 - -
Gma01g00263 652 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Gma01g00263 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 633 - -
Gma01g00263 652 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Gma01g00263 652 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Gma01g00263 652 MobiDBLite consensus disorder prediction 607 633 - -
Gma01g00263 652 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Gma01g00263 652 ProSiteProfiles Protein kinase domain profile. 324 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00263 652 SUPERFAMILY Protein kinase-like (PK-like) 308 628 IPR011009 -
Gma01g00263 652 Gene3D - 144 244 IPR038408 -
Gma01g00263 652 Gene3D - 34 134 IPR038408 -
Gma01g00263 652 SMART serkin_6 324 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00263 652 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Gma01g00263 652 Pfam Salt stress response/antifungal 50 132 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00263 Gma-Chr1 2974001 2977395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00263 16 652 Receptor kinase-like Gene Family AT1G70520 68.701 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma01g00263 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00263 - - gmx:100804094 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00263 01 2974001 2977395 Gma01g00263 01 2974001 2977395 ECH
Gma01g00263 01 2974001 2977395 Gma18g01276 18 21878304 21881459 PCT