Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00252 ATGGCTTCTTCTCTAGTGGCACTTCTTTCTCTTCTCCTCACTCTTCTTGCAACTTCATGTCTAAGTGCAACTGTGTTTTCCCTCCAAGTTTCAATCAAAACAACTTACTTGGAACCTTTCAAATGCTCCCCTAAGATCACCACATGCAATGCCTCACTCTACCACATAAGCTACGGCAACAACATAGACGACATAGCAACCTTTTACTCCGTTAGTACCTCCCAAATCAAACCGATAATGCGCACTACCGAGCAAGATTACCTCATAACAGTGCCTTGCTCTTGCAATGACACCAATGGACTTGGCGGATATTTCTATGATACAACCTACAAGGTGAAGTCCAATGACACGTTTGTGAATATTAACAACTTTGTTTACAGTGGTCAAGCCTGGCCTATTAACGGAGAATTGGACCAAAATGAGGAGTTAACAATACATCTTCCATGTGGGTGTTCAGAGAAAAGTGATTCTCAAATTGTTGTCACGTACACGGTTCAGCGGAATGATACACCTGTATCAATTGCTGCTCTGCTAAATGCTACGTTAGATGACATGGTGAGTATGAACGAAGTTCTGGCTCAGAACCCCTCATTCATAGATGTTACTTGGGTGTTGTATGTTCCTAGGGAATTGAATGGTTTACCACTTTCCAAAGGAAAAGACAAGAAACAAAAGTTGGAGATAATCATTGGCATCTTAGCGGGTGTGACATTACTTTCAATTATTACCTTGATTATTCTCAGTGTCGTTCTTAGGAGATCCAGAGCCAATAAAACTGCCAAAAATGATCCAAGTGTTGTCTCTAAAAGATCAATCACCAATAGAACTATTTCCATAAAGAACCGAGACTTTCATACAGAATATATTGAAGATGCAACAACATTTGAATCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACCCGAAGGATTGGAGTAGGTGGATACGGTACGGTGTATTTCGGAATGTTAGAGGAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGCAGGATACATCATATTAACATTGTGGAGTTGTTGGGATATGCTAGTGGAGATGACCACCTTTATTTGGTGTATGAGTTTGTTCCAAATGGATCTCTCTGTGAACATCTTCATGATCCATTACTGAAAGGTCACCAGCCACTGTCTTGGTGTGCTAGGATTCAAATTGCACTGGATGCAGCAAAAGGTCTTGAATATATACATGATTACACAAAAGCACGATATGTGCACCGTGATATAAAGACCAGTAATATTCTTCTTGATGAGAAGCTCAGAGCCAAGGTAGCAGATTTCGGACTTGCAAAGCTAGTAGAACGAACCAACGATGAAGAATTGATAGCGACTAGGCTTGTTGGAACACCAGGCTACCTTCCCCCAGAATCTGTGAAGGAGCTTCAAGTGACTATAAAAACCGATGTATTTGCATTTGGTGTGGTTCTGGCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAAGAAGCCAGCAATATGAAATCACTTACTTCAGTTGTTGGCCAAATATTCAAAGATGATGACCCAGAGACTGTTTTAGCAGATGCCATAGATGGGAATCTTCAACGTAGCTATCCTATGGAAGATGTCTACAAGATGGCAGAACTAGCTCATTGGTGCTTGTGCGAAGATCCAAATGTCAGGCCTGAGATGAGGGAGATTGTTGTGGCATTGTCACAGATTGTGATGTCCTCCACAGAATGGGAAGCATCACTAGGTGGAGACAGAGAGGTCTTCAGCGGGGTACTTGATGGAAGATGA 1860 0.4145 MASSLVALLSLLLTLLATSCLSATVFSLQVSIKTTYLEPFKCSPKITTCNASLYHISYGNNIDDIATFYSVSTSQIKPIMRTTEQDYLITVPCSCNDTNGLGGYFYDTTYKVKSNDTFVNINNFVYSGQAWPINGELDQNEELTIHLPCGCSEKSDSQIVVTYTVQRNDTPVSIAALLNATLDDMVSMNEVLAQNPSFIDVTWVLYVPRELNGLPLSKGKDKKQKLEIIIGILAGVTLLSIITLIILSVVLRRSRANKTAKNDPSVVSKRSITNRTISIKNRDFHTEYIEDATTFESERPVIYALEEIEDATNNFDETRRIGVGGYGTVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCRIHHINIVELLGYASGDDHLYLVYEFVPNGSLCEHLHDPLLKGHQPLSWCARIQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEELIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLAELITGKRALFRDNQEASNMKSLTSVVGQIFKDDDPETVLADAIDGNLQRSYPMEDVYKMAELAHWCLCEDPNVRPEMREIVVALSQIVMSSTEWEASLGGDREVFSGVLDGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00252 619 ProSiteProfiles Protein kinase domain profile. 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00252 619 Pfam LysM domain 163 208 IPR018392 -
Gma01g00252 619 Gene3D Transferase(Phosphotransferase) domain 1 387 607 - -
Gma01g00252 619 SUPERFAMILY Protein kinase-like (PK-like) 299 591 IPR011009 -
Gma01g00252 619 ProSiteProfiles LysM domain profile. 161 207 IPR018392 -
Gma01g00252 619 Gene3D Phosphorylase Kinase; domain 1 293 386 - -
Gma01g00252 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Gma01g00252 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 24 619 IPR044812 GO:0019199|GO:0045087
Gma01g00252 619 Gene3D LysM domain 154 212 IPR036779 -
Gma01g00252 619 SMART serkin_6 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00252 619 SUPERFAMILY LysM domain 161 208 IPR036779 -
Gma01g00252 619 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 24 619 - -
Gma01g00252 619 Pfam Protein kinase domain 316 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00252 619 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00252 Gma-Chr1 2884116 2888553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00252 295 619 Receptor kinase-like Gene Family AT1G51940 51.360 7.69e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gma01g00252 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00252 - - gmx:100800907 1198.34