Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00241 ATGCCTCTTCTTCTCTCACGCACCCCACCATCTTCTTTTCCTCTAACCCCTCTTAGAAACGCACGCGCGCCTCTAATCACACCCTCCCAGAAGCGCTTCACTCTCGCCGCAACGCGAATCGTTCTCTTCACTTCCCGCCGCCGCATTCTAGCATCCCCTCCTCCTCCTCCCAAGTGCGCCTCCATCAACGGAATCTCTGTCCCGAACAACCCAGAAGCTTCCGGAGAACAACAAGTCTATAGTGCTTCCGGGCTTCTCGACCGGATTCGGAAATGGGTCGGGTTTTTACCGTCGATTCTTCCCGGCGGACGGTGGTGGGAGTTCTCCGGCGACGTCGACGTTCAGGTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTCGGGAAAATGTGGGACCTTGTCGCGCGTGACAGATGGGTCATCTTCGCTGCATTCTCTGCTCTCATTGTTGCTGCAGTTTCGGAGATTTCGATACCGCATTTCTTGACAGCATCCATCTTCTCAGCACAGAGTGCGGACCTTGCTGTTTTTCACCGGAATGTGCGGTTGTTGGTTCTGTTGTGCGTGGCTTCGGGAATATGCAGTGGGATACGAGGTTGCTTTTTTGGCATCGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACACTATACTCATCTCTTCTTCTGCAGGATATATCGTTTTTTGACAATGAAACAGTAGGTGATTTGACAAGTAGGCTTGGAGCGGATTGCCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAATTTGATAATGCGCAACGTTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATCTACATTGGTGGTATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATgtagcccaagagatgttctctcTTATTAGAACTGTGCGAGTTTATGGAACAGAAGAAGAAGAACATGGAAGGTATAAGTGGTGGCTGGAGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGAGTTTGGAATTTTAGCTTTAACATTCTTTATCATTCAACTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATATTATACAGTGAATGGTTAATTTATTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGCGAAAAAGTATTCCACTTAATGGATCTCTCACCTAGCAGCCAATTCATAGAAAGAGGCAAGCATTTTTCTTCTCAAATATTTCATATGAATAAACACCTTCATATTAGTTTATTGCAGAGGTTAACAGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAATGGCATCTGTAGTGCAACATGTGAACTTTGTTGTCCATCCTGGAGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGATAGATGATATCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCGAAACTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGCACCCAAGATGTAAAGCAGAAGGATATTGAATGGGCTGCAAAGCAGGCCTATGCCCACAATTTTATCTCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAGCATAATGTTAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATTGCACATAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGGGAAATTGTTGAGATGGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTGTATGCACGGTTAACCAGAAAACAGGCTGATGCCATGGCATGA 2154 0.4443 MPLLLSRTPPSSFPLTPLRNARAPLITPSQKRFTLAATRIVLFTSRRRILASPPPPPKCASINGISVPNNPEASGEQQVYSASGLLDRIRKWVGFLPSILPGGRWWEFSGDVDVQVVAQPVTVWRALGKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQSADLAVFHRNVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYGRYQKKAARLIQEVTASANDVAQEMFSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFIERGKHFSSQIFHMNKHLHISLLQRLTGCIEFLNVSFHYPSRPMASVVQHVNFVVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTQDVKQKDIEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGEIVEMGSHRELLLKDGLYARLTRKQADAMA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00241 717 Pfam ABC transporter transmembrane region 142 408 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma01g00241 717 SUPERFAMILY ABC transporter transmembrane region 129 439 IPR036640 GO:0005524|GO:0016021
Gma01g00241 717 PANTHER ABC TRANSPORTER B FAMILY 81 716 - -
Gma01g00241 717 Gene3D ABC transporter type 1, transmembrane domain 124 442 IPR036640 GO:0005524|GO:0016021
Gma01g00241 717 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 423 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma01g00241 717 SMART AAA_5 500 688 IPR003593 -
Gma01g00241 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 473 711 IPR003439 GO:0005524
Gma01g00241 717 Pfam ABC transporter 492 639 IPR003439 GO:0005524
Gma01g00241 717 CDD ABC_6TM_TAP 144 431 - -
Gma01g00241 717 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 81 716 - -
Gma01g00241 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 712 IPR027417 -
Gma01g00241 717 Gene3D - 464 716 IPR027417 -
Gma01g00241 717 ProSitePatterns ABC transporters family signature. 611 625 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00241 Gma-Chr1 2775481 2783259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00241 212 715 Calmodulin-binding Proteins AT2G36910 33.398 1.37e-68 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00241 - - gmx:100813359 1346.26