Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00236 ATGCGACGTCTAAACGGGGTAGCTCCGATTCTCGGACCCGACCCGAAAGCTGACGGAGGAGTCGTCGCTGATAACCCGAAGCGTTCCTCCGCCGTGAACAAGAGGGCCTTAAGAGAAGACGGCGGCGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCTCAGTCGAAGGAGCGGCGGTGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCCTCAAGGCTCGCACCAACTTCGTCTACCCAACTTCTCCGCAACCTTCTTCCGCCACCACCGAACACTTCTTACCTAACTTCAACAACAGCAACAACTTTCACAAACACTCAGTCTTCAATCACCACCACGGTAACCGCCACATAACCGGTCCCACCACCTGCTTTGACCAGCCTCACGCCGTTGACTTTTTAGCTCCGCGAAACTCTTCTTCTTCTGCTCTCAACATGCTTCTCTTTCGCGACCTCGTTCACTCTAACCCTTCTTTGCTTTCTTCTTCCACTACTCATAACTTTCACGACCAGTTTTACAGCAAGGGTGCTTCTACTTTTTCGTCTTTACCTGGTGTTTCTTCTTCTTCTTCTTCTCTTGTTCCTTGTTATTCGGTGAACAATTCTTGTGGAGGCTCTTCATCTGTTAAGATGAACACTCACTGTGGAACTAATTTTTCTGAAAAAGGTGATGATGGTGATGGTTCTGGGTTTTTCTCTCGAGAGTCTTCGGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATGCGAGAGTCTGCCAAAAATGGAGACTTTTCGCAACCCTCAGGAGGAGTCGCTTCTTCTCCCTCCGCTTGTTTCTGAATCAACGCTTGTTTCCACCGCGCAAGAATGCTATGATGATGACACGAAGAAGGGGTTTCTGAAGAACGACAGTTTAGGTGTTTTTTCTTCTGATCATCAAGGTTTTCCCATGCAGCAATTCGACGGCTTTAATGGGTTTAGTAGTGTGCAGGCTATGGCTCTGGGGAATGAACAAATCATGATGAATCATGCAGAGAACTGTGTTGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATGCTTTTGCAATCAGAATGCAAAATACTTAA 1194 0.4966 MRRLNGVAPILGPDPKADGGVVADNPKRSSAVNKRALREDGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSATTEHFLPNFNNSNNFHKHSVFNHHHGNRHITGPTTCFDQPHAVDFLAPRNSSSSALNMLLFRDLVHSNPSLLSSSTTHNFHDQFYSKGASTFSSLPGVSSSSSSLVPCYSVNNSCGGSSSVKMNTHCGTNFSEKGDDGDGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCESLPKMETFRNPQEESLLLPPLVSESTLVSTAQECYDDDTKKGFLKNDSLGVFSSDHQGFPMQQFDGFNGFSSVQAMALGNEQIMMNHAENCVVEDVFQYQELLNAFAIRMQNT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00236 397 MobiDBLite consensus disorder prediction 1 40 - -
Gma01g00236 397 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Gma01g00236 397 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 397 - -
Gma01g00236 397 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Gma01g00236 397 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Gma01g00236 397 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Gma01g00236 397 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Gma01g00236 397 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gma01g00236 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 28 397 - -
Gma01g00236 397 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Gma01g00236 397 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00236 Gma-Chr1 2721855 2723048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00236 45 364 AP2-EREBP Transcription Factor Family AT1G24590 35.474 8.70e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g00236 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00236 - - gmx:102669715 712.99