Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00221 ATGGATCCGCTCAGAGGATCCGAACCCGAAAACCCTATTGCCACGTGTCTCTCCATGCTGTCCCTCCGCCGCTTCTCCGCGTGCCGCGACTTCGCCCGCCGCCTCCCCCCCTCCGACTCCGTCCCCCGCGTCCTAGCCGTCGCCGACGTCCTCTCCGCCGCCGACTTCTACTCCGTCCTACAGCTCCGCCCCTCCGACGGTGGCAACCGCGACCTCGCGCGGCGGCAGTACGCGAAGCTCGCGCTCCTCCTCGACCCAACGAACCCCGACAAGCTCCCGTTCTCCGACGAGGCCCTCGCACGTGTCCAGAATGCCTGGCACGTGCTCTCCCACCCCGAACGCCGCGCCCTCCACGACCGCGAGCAAAACGCAAACCTAAACCCGAACCCTATGACGGCGTCGTTTTGGACCGCGTGCCCCTACTGCTGGGGCCTCTTCGAGTACGAGAAGAGGTACGAGGATAGAGCGCTGCTGTGCCACGTCTGCGGGAAGGCCTTCCAGGGCGTGCCGGTGAAGCCGCCAACGAAGACGGGCGACGCCGTCATGGAGGGGGAGGAGCTCCGGCAGTACTACTCTTGTGAAGCTAGTGTGCCATTGATGTGTTACGAGGTTATGGGTAACAATGTATTGGGTGGACAAAATGCTGCACAATATGTCTACATTTCTGATGATAATGATAATAATGATGGAGGGTTTGTGAGAAATGAAGGTTTGCAAGGCAGCGGTGAGAAGAGGAGGATGAGGGTGAAGACCGTGGCGAACAAGGAAGATGGGGAATTGGAGTTCACTGAAGGAGATGATGATGTCTTTGTTGGTTTAGTACAGGGCATGCAACATGTTCGAAATTACTATAACTCAGATGCTCAAATGATAAGAGGTGGCTTCCATCAGACATTCATATCTAGGACATACAAAACCAGTTTCTTGAAGCCGAGATCAAAGGTAGAGATCAAACTATTGGCTGCTAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAATATCCTCCCCAACATAATCAAAAAGGACAAGGCATCAGTATTGGCAGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGTATCAAAACTGGAACAAGATAGTTCTAGTAATCCATCAAAGGATGTTGTTAAGTTTCCTAATGGAACAGATAAGTTGAATTTGGAAAGATGTAACAACGACGAGGGCATAGTGAAGGCCACGCTGAGTTGTGAGGATAGACTAGGATTGATGTCATCAATATCTGGGGCACTAGAGCAAGTGAAAGCCAAAGTGGTAAAGGCTGAGATAGTGAGTGTGGGAGGGAGAGCCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAAATGATGGTACGGGGACGCTCAAGAGCAAATTGAGGGTTGCAATGCAAAAGCCACCCAAGATGCAGCGTTTTACTCAGTAA 1458 0.5206 MDPLRGSEPENPIATCLSMLSLRRFSACRDFARRLPPSDSVPRVLAVADVLSAADFYSVLQLRPSDGGNRDLARRQYAKLALLLDPTNPDKLPFSDEALARVQNAWHVLSHPERRALHDREQNANLNPNPMTASFWTACPYCWGLFEYEKRYEDRALLCHVCGKAFQGVPVKPPTKTGDAVMEGEELRQYYSCEASVPLMCYEVMGNNVLGGQNAAQYVYISDDNDNNDGGFVRNEGLQGSGEKRRMRVKTVANKEDGELEFTEGDDDVFVGLVQGMQHVRNYYNSDAQMIRGGFHQTFISRTYKTSFLKPRSKVEIKLLAAKKHSEAEKRRRMRINGQYETLRNILPNIIKKDKASVLAETIKQVKELKKKVSKLEQDSSSNPSKDVVKFPNGTDKLNLERCNNDEGIVKATLSCEDRLGLMSSISGALEQVKAKVVKAEIVSVGGRARSVLWVQGLGNDGTGTLKSKLRVAMQKPPKMQRFTQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00221 485 Pfam Helix-loop-helix DNA-binding domain 324 369 IPR011598 GO:0046983
Gma01g00221 485 Coils Coil 359 379 - -
Gma01g00221 485 Pfam DnaJ domain 55 119 IPR001623 -
Gma01g00221 485 CDD ACT_UUR-ACR-like 413 461 - -
Gma01g00221 485 SMART finulus 326 375 IPR011598 GO:0046983
Gma01g00221 485 MobiDBLite consensus disorder prediction 374 393 - -
Gma01g00221 485 CDD DnaJ 55 110 IPR001623 -
Gma01g00221 485 Gene3D DnaJ domain 50 122 IPR036869 -
Gma01g00221 485 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 253 - -
Gma01g00221 485 ProSiteProfiles dnaJ domain profile. 55 122 IPR001623 -
Gma01g00221 485 Gene3D - 321 387 IPR036638 GO:0046983
Gma01g00221 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Gma01g00221 485 SUPERFAMILY ACT-like 411 460 IPR045865 -
Gma01g00221 485 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 253 - -
Gma01g00221 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 381 IPR036638 GO:0046983
Gma01g00221 485 SUPERFAMILY Chaperone J-domain 49 122 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00221 Gma-Chr1 2471991 2479071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00221 319 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 41.429 1.01e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g00221 DnaJ 8.6e-07 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00221 - - gsj:114406356 522.702