Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00208 ATGGCTCGTGCTACTAACTGGCTTTCGTTCTCTCTCTCCCCAATGGAAATGCTCCGAACCTCCGAACCTCAGTTCCTTCAATACGACGCCGCTTCCGCTACTTCCTCACATCACTACTACCTCGACAACTTGTACACCAACGGGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACGTGAGTTTTGTTGAATCTTCGTCGCAGAGCGTCGGCCACGTGCCGCCGCCGCCGCCGAAGCTGGAGGATTTTCTCGGCGACTCCTCCGCCGTGATGCGTTACTCCGACAGCCAGACGGAGACGCAGGACTCGTCGCTGACGCACATCTACGaccaccaccaccaccaccaccaccaccaccacGGTTCTACTTCGTACTTCGGCGGTGACCAGCAGGATCTCAAGGCCATTACTGGATTTCAAGCTTTTTCGACCAACTCCGGGTCCGAGGTTGATGATTCTGCATCCATCGGAAAAGCGCAGGCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCCGGCAACGAGTTCGCCGCGTTCTCCGGTGGCACAACCGGAACCTTGTCGCTCGCCGTTGCACTGAGCTCCGAGAAGGCCGTTGTCGCGGCGGAGTCCAATAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTTACTAGGCACCGATGGACAGGAAGATATGAAGCGCATCTATGGGACAATAGTTGCAGAAGGGAGGGTCAAGCCAGAAAAGGGCGTCAAGTTTATTTGGGTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTATTCGAAGGAAGTGGAGGAGATGAAACATGTAACAAAGCAAGAATTTATTGCATCATTGCGGAGGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATTTATACTTGGGAACATTCGCAACCGAGGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAACGCGGTAACCAACTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAGGCTTTCCCTTGAATCAGAGCAGAAAGCTCCTCCTGTGAACAGCAGCAGTCAGCAGCAGAATCCACAGTGTGGTAACGTGAGTGGCAGCATCAATTTCTCAGCCATTCATCAGCCAATTGCTTCAATCCCTTGTGGAATTCCGTTTGATTCAACAACAGCATATTATCCTCACAACCTTTTCCAACATTTTCACCCTACCAACGCTGGTGCAGCAGCGTCTGCTGTTACTTCTGCCAATGCAACCGCACTAACTGCACTGCCAGCATCAGCAGCAACTGAGTTCTTTATTTGGCCTCATCAGTCTTATTGA 1536 0.4974 MARATNWLSFSLSPMEMLRTSEPQFLQYDAASATSSHHYYLDNLYTNGWGNGSLKFEQNLNHSDVSFVESSSQSVGHVPPPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHIYDHHHHHHHHHHGSTSYFGGDQQDLKAITGFQAFSTNSGSEVDDSASIGKAQASEFGTHSIESSGNEFAAFSGGTTGTLSLAVALSSEKAVVAAESNSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLRLSLESEQKAPPVNSSSQQQNPQCGNVSGSINFSAIHQPIASIPCGIPFDSTTAYYPHNLFQHFHPTNAGAAASAVTSANATALTALPASAATEFFIWPHQSY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00208 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 508 - -
Gma01g00208 511 Gene3D AP2/ERF domain 225 293 IPR036955 GO:0003700|GO:0006355
Gma01g00208 511 Gene3D AP2/ERF domain 327 387 IPR036955 GO:0003700|GO:0006355
Gma01g00208 511 Pfam AP2 domain 225 283 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 Pfam AP2 domain 327 377 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 508 - -
Gma01g00208 511 PRINTS Ethylene responsive element binding protein signature 367 387 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 PRINTS Ethylene responsive element binding protein signature 226 237 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 SUPERFAMILY DNA-binding domain 326 386 IPR016177 GO:0003677
Gma01g00208 511 ProSiteProfiles AP2/ERF domain profile. 225 291 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 CDD AP2 326 385 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 SUPERFAMILY DNA-binding domain 224 293 IPR016177 GO:0003677
Gma01g00208 511 CDD AP2 224 293 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 ProSiteProfiles AP2/ERF domain profile. 327 385 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 SMART rav1_2 327 391 IPR001471 GO:0003700|GO:0006355
Gma01g00208 511 SMART rav1_2 225 297 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00208 Gma-Chr1 2286874 2292557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00208 83 511 AP2-EREBP Transcription Factor Family AT5G10510 59.528 3.12e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gma01g00208 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00208 K09285 - gmx:100777168 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00208 01 2286874 2292557 Gma11g00272 11 2157051 2160792 GST