Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00192 ATGAAGGTGGAAAGGGTTTCAATATTCCAGTGGTGGGTTAGAGTAGCTGTGCAGCTCAGCTTAATCTTGCTTGGTGCCTTTTCTGATAGAGTCTCATCAATTAGAAGCGTTTCGACGTCTCCTCCAGTAAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTAGCAACGGCATCGTTTCCCTCAATTTGTCAAAGCCCGAGGGCCATATCATTGGAATATATAATGGAATTAACAATTTACTTGAGCCAAAAAATAAAGAAGACGATAGAGGGTACTTGGACGTCGTTTGGAACGAACCAGGAAAACCTGGCATATTTGAGAGAATCGATGGGACACATTTCTCAGTCATTGCAGCAAACGAGAATATAGTTGAAATTTCATTTTTAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCTATGAACATAGACAAAAGGTATATATTGCGAAGAGGTGATTATGGGTTTTATTCATACGCAATATTTAATCGACCTTCAGGATTACCTGCGGTGGAGGTTTATCAAATTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTCCACTACATGGCCATATCTGATACTAGGCAAAGGAACATGCCATCTATGAGAGATAGATTATCGGGTCAAAGCCTGGCGTATCCTGAAGCTGTTCTTTTAACCCATGCATCTGAGCCACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAACACTGTTCATGGCTGGATTACCCAGGATGATTCAGCACCCGTGGGCTTCTGGTTGATAACACCCAGTAATGAGTTCCGCCATGCTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCAACTACTCTTTCCATGTTTGTGAGCACTCATTATGCTGGCAAGGAGGTAGCCATGGTATTTGGTGAAGGGGAGACATATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACTCTGTTCCCAACAAATCTCAGTTTCGGTCTCTCTGGTCAGATGCTGTAGAACAGTTATCGAATGAAGTAAGAAGATGGCCTTATGATTTCGTTGGATCAAAAGATTTCCTTCCACCCAATCAACGAGGAACAGTGACAGGACGACTACTAGTCCTAGATGGGGGAAAGAGAGCTCAACCTGCTAACAATGCTTATGTTGGTCTAGCTTTGCCAGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTCTGGATTCAAGCTGACAAAGATGGACACTTCTTGATTCAAAATATTGTTCCTGGGGATTACAACTTGTATGCATGGGTTCCGGGTTTTATTGGAGATTATAGATATCAAACTAAAATTACCATCAAACCAGGATGCAACATCAACTTGAATTCACTGGTTTATAACCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATTCTATATACCAGACCCTAACCCCAAGTTCACGAACAGATTATTCCAGAACGATAGCCAAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAACTATATCCAAACCATGATCTCGTTTACACTGTTGGTGTATCTGACTATCACAATGACTGGTTTTATGCTCAAGTTACCAGGAGCACACCAGAAAAGACATTCGTGCCAACGACATGGCAAATTCAATTCCAACTTAAAAATATCATAATGCCAGGAAATTACACATTACAAGTGGGGTTGGCATCCGCCAATAATGCTAGACTGGAGGTTAGGTTCAATGACCAGAATGCTAAGCTTCCCCACTTCTCAACAGGGCTAACAGGCGATGACAATGCCATAGCAAGACATGGAATTCATGGATTGTATAGGTTGTATACTATAGCTGTAGGCAGCAATCATTTGGTGAAAGGAAAAAACACCATCTATTTGACACAGTCAAAAGGCATAGGTCCTTTCATGGGACTTATGTATGATTATGTCCGCTTAGAAAGTCCACCAATTAAAAGTACTTGA 2019 0.4215 MKVERVSIFQWWVRVAVQLSLILLGAFSDRVSSIRSVSTSPPVKLNTENPHQVVISNGIVSLNLSKPEGHIIGIYNGINNLLEPKNKEDDRGYLDVVWNEPGKPGIFERIDGTHFSVIAANENIVEISFLRTWTASMKGSSVPMNIDKRYILRRGDYGFYSYAIFNRPSGLPAVEVYQIRIVFKLDEARFHYMAISDTRQRNMPSMRDRLSGQSLAYPEAVLLTHASEPQFKGEVDDKYQYSSENKDNTVHGWITQDDSAPVGFWLITPSNEFRHAGPIKQDLTSHVGPTTLSMFVSTHYAGKEVAMVFGEGETYKKVFGPVFVYLNSVPNKSQFRSLWSDAVEQLSNEVRRWPYDFVGSKDFLPPNQRGTVTGRLLVLDGGKRAQPANNAYVGLALPGDAGSWQRESKGYQFWIQADKDGHFLIQNIVPGDYNLYAWVPGFIGDYRYQTKITIKPGCNINLNSLVYNPPRNGPTLWEIGIPDRSAAEFYIPDPNPKFTNRLFQNDSQDKFRQYGLWERYTELYPNHDLVYTVGVSDYHNDWFYAQVTRSTPEKTFVPTTWQIQFQLKNIIMPGNYTLQVGLASANNARLEVRFNDQNAKLPHFSTGLTGDDNAIARHGIHGLYRLYTIAVGSNHLVKGKNTIYLTQSKGIGPFMGLMYDYVRLESPPIKST 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00192 672 CDD RGL4_N 52 334 - -
Gma01g00192 672 Gene3D - 473 665 - -
Gma01g00192 672 CDD RGL4_M 368 465 IPR029413 -
Gma01g00192 672 Pfam Polysaccharide lyase family 4, domain III 475 664 IPR029411 -
Gma01g00192 672 Pfam Polysaccharide lyase family 4, domain II 389 462 IPR029413 -
Gma01g00192 672 SUPERFAMILY Galactose-binding domain-like 472 665 IPR008979 -
Gma01g00192 672 Pfam Rhamnogalacturonate lyase family 38 235 IPR010325 -
Gma01g00192 672 SUPERFAMILY Galactose mutarotase-like 47 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma01g00192 672 Gene3D - 47 332 IPR014718 GO:0030246
Gma01g00192 672 SUPERFAMILY Starch-binding domain-like 364 464 IPR013784 GO:0030246
Gma01g00192 672 Gene3D - 364 464 - -
Gma01g00192 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 668 - -
Gma01g00192 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 47 668 - -
Gma01g00192 672 CDD RGL4_C 477 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00192 Gma-Chr1 2131413 2138849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00192 43 667 Polysaccharide Lyase AT1G09890 56.962 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00192 K18195 - gmx:100781089 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00192 01 2131413 2138849 Gma09g01867 09 44275378 44282649 GST