Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00181 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTACTTGGAGTAATGCTTTGTCAACTGGGTTGAATGAGTTACTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCTACTTTGAATCCCTCATTTGCTGCATTTTCCACTCCACTAGACCACAGATTTGAATGCCCTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCTGAGCTTGATTCTTCATACACCAGGAATGATGAGTCAGCACCACTTTTGCCACAAGAGGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGGGATAACCAGAGCTTGGAACAAGCAAAAATTGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGCTTGTGTGGGGAGAAAAAACCCAAATCAAAGAAACTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCAAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACAATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATAGAGGAGGGAACAAATCAGATAAACCTCTTAGGCATTTCTAAGGAACTAAAGCCCAATGAAGTAATGGTTAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAG 1005 0.4269 MELSQLGFLDELLAPRKDTTWSNALSTGLNELLLPSGWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGRDNQSLEQAKIGCKIEEQVTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEIEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSGAAEQRNCMNQEEIKQALFRNAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00181 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Gma01g00181 334 CDD ACT_UUR-ACR-like 260 301 - -
Gma01g00181 334 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Gma01g00181 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 221 IPR036638 GO:0046983
Gma01g00181 334 SMART finulus 167 216 IPR011598 GO:0046983
Gma01g00181 334 PANTHER - 2 334 - -
Gma01g00181 334 Gene3D - 153 227 IPR036638 GO:0046983
Gma01g00181 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00181 Gma-Chr1 1981315 1983160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00181 152 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.399 6.30e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g00181 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00181 - - gmx:100806571 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00181 01 1981315 1983160 Gma09g01884 09 44438744 44440166 GST