Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00177 ATGATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAACGTGTCGTCGACCGTGGCGTCCGGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGAAATTACTTAGGGTTATCTGATTGCTCATCAGTTGATAGCAGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCCCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTTGTCGGCGCAAAAAACTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTCGCTGGTAATACAGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTTGCAAGAAAGGCCCTGTTCAACTAAGAATGGAACCGGTCATAACCATACAGGTGCTTCCATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCTTTTAGGAAAAACTCGATGGCCACGACAACTAACAAGAACAATGATGAAGTGGATGGGAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACTTATCAGGAACTATCATCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1080 0.4731 MMSPPAVVTEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00177 359 MobiDBLite consensus disorder prediction 12 34 - -
Gma01g00177 359 MobiDBLite consensus disorder prediction 176 202 - -
Gma01g00177 359 Gene3D - 234 353 - -
Gma01g00177 359 MobiDBLite consensus disorder prediction 176 200 - -
Gma01g00177 359 MobiDBLite consensus disorder prediction 1 34 - -
Gma01g00177 359 ProSiteProfiles PB1 domain profile. 238 343 IPR000270 GO:0005515
Gma01g00177 359 PANTHER AUXIN-INDUCED PROTEIN 14 352 - -
Gma01g00177 359 SUPERFAMILY CAD & PB1 domains 237 340 - -
Gma01g00177 359 Pfam AUX/IAA family 76 350 IPR033389 -
Gma01g00177 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 352 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00177 Gma-Chr1 1926653 1930916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00177 242 349 B3 DNA Binding Superfamily AT4G23980 29.630 1.23e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma01g00177 AUX_IAA 6.6e-89 CL0072