Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00156 ATGGCGGCTACTTTAGAATCAGCCTTCATCCTCTTCGCACCTCAACGGTTCTCCAATAGCCATCGTTTCTCTGCAAAAGCACCGATCTCCATCAAGCTCCATGCTTCCACCTCCCTTTTCTTCTCTTCCAAGTCCTCCTTCAAAACGGGAAGACTCTGCTTCCAGTTATGCTCCACTTTGCAAGAGGTAGCAGCAACAGAAGAAACACCTGAGCTAACGCAACCAACAGACAACGTAAAGAAGCTGTACGTGGTTAACTTGTCTTGGTCTCTGACGGCGGCAGACATCAATGACCTCTTTGCCCAAAGCGGAACCGTAACCGACGTCGAGATAATAAAGAGCAAAGACGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAACTTGCAAAGAGATTCAAAAAACCTCCTTCTCCTCCACCTCCTCCAGGTCCCCGTCCTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAACTCTTCGCTGAGAATTTCAAAACACCATCTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACGATCTGCTGGGTACGGATTTGTTTCTTTTCTTACCAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAgctggaagggaaaaagatgaagaccaagataaagatgctggaagtgaagaagatgaagacgaaggttctgatgctCGACCGGAAGAATCATAA 870 0.4333 MAATLESAFILFAPQRFSNSHRFSAKAPISIKLHASTSLFFSSKSSFKTGRLCFQLCSTLQEVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKAGREKDEDQDKDAGSEEDEDEGSDARPEES 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00156 289 PANTHER OS02G0815200 PROTEIN 9 272 - -
Gma01g00156 289 MobiDBLite consensus disorder prediction 247 289 - -
Gma01g00156 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Gma01g00156 289 MobiDBLite consensus disorder prediction 270 289 - -
Gma01g00156 289 MobiDBLite consensus disorder prediction 247 269 - -
Gma01g00156 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 250 IPR000504 GO:0003723
Gma01g00156 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
Gma01g00156 289 Gene3D - 174 287 IPR012677 -
Gma01g00156 289 Gene3D - 58 173 IPR012677 -
Gma01g00156 289 PANTHER CHLOROPLAST, PUTATIVE-RELATED 9 272 - -
Gma01g00156 289 SMART rrm1_1 178 252 IPR000504 GO:0003723
Gma01g00156 289 SMART rrm1_1 81 153 IPR000504 GO:0003723
Gma01g00156 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Gma01g00156 289 SUPERFAMILY RNA-binding domain, RBD 79 257 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00156 Gma-Chr1 1683831 1687235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00156 79 283 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 1.02e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00156 - - gmx:100793319 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00156 01 1683831 1687235 Gma01g00156 01 1683831 1687235 ECH