Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00155 ATGGCTTCGCTAGGCAACCCAAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGCTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGATGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGGGTCTTGGTCAGTGCTTTTCTCCTTGTGAGCTACTACACCATAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAAACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCTTGGCATGCTCCAACAATTGGCTTAGATGAGGCTCTGATCAAGTCCATAACGGTTTGCAAGTACAAGAAAGGTGATGGGTTGGTTGAGGTAACAGATTGCTCCGTTTGTCTAAGTGAGTTTCAAGATGATGAAAGTGTTAGGCTCTTACCTAAATGCAGCCACGCTTTTCATCTTCCTTGCATTGACACATGGCTCAAGTCTCACTCTAGTTGCCCTCTATGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCACTTCATGTTGCTTCCCCTGTCACGGAACCACCTTCAAGGAACGATACTTCTTCAGGTAACCAACGTGCAGATGAAAACATTGTTGCTGTTGCAAGGGACAGTGAATTAGATGCTGTGGAAGGAGAAGTCACACTCACACATGGTGGAGCTGTTTCAAAGAGTGCATTGCGTGCTTTGAGTGATCTAGGCAATTTGAGAGGAAGGCATAGTGTAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGGACGGTTTCTATGGACCATTCATTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGGTGTTCTAATGGGGCTGGTCCTTCAAAGAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAAGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTGCCTGTCTAA 1095 0.4393 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPDDDSSPNFSPLVIAVIGVLVSAFLLVSYYTIISKYCGSRESSQSENHEENVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCSVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHVASPVTEPPSRNDTSSGNQRADENIVAVARDSELDAVEGEVTLTHGGAVSKSALRALSDLGNLRGRHSVIEIRDEGYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKNSRGESSKSSYRRKVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQWVLPV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00155 364 Pfam Ring finger domain 141 184 IPR001841 -
Gma01g00155 364 SMART ring_2 142 183 IPR001841 -
Gma01g00155 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Gma01g00155 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 355 IPR044675 -
Gma01g00155 364 SUPERFAMILY RING/U-box 122 190 - -
Gma01g00155 364 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gma01g00155 364 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 355 - -
Gma01g00155 364 CDD RING-H2_PA-TM-RING 141 184 - -
Gma01g00155 364 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00155 Gma-Chr1 1678788 1680191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00155 1 315 C3H Transcription Factor Family AT3G03550 42.771 4.41e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00155 - - gmx:100792267 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00155 01 1678788 1680191 Gma01g00155 01 1678788 1680191 ECH
Gma01g00155 01 1678788 1680191 Gma09g01907 09 44685730 44695157 GST