Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00151 ATGGGTAAGAAGAAACAAAAGAACCCGCAACAATCCTCCGAAACCGACGCCGTTTCAACCCCTTCCAGCATTTTCAGCAAACTCTTCGCCAACGCGCCGGAACAGACCACCGCAACCGCCGCTGCCTCTCTATTTTCCGATGACAATCCCTTTCGAAGAAAATCCGCTCCACTTTCTTACTCAACAAACCGCACTCAAAACCCTAACAATGGCGACCACCCCGTGAACACCGATTCCAGCGAGGAGAAGAAGCGGAAGAGGACCAAAGACAAAACCTCAGCCCCAGCCCCCGACACCGTTTCCGTAATCGAACCTTTGGAGGAACCGGGGAAGAAGAGGAAACGCGATTCCGACGAGGGAAAAGACCTTAGTGTGGGTGCAGAAGCGATAGGGAAGAGGAAAAGGAAAAGGGACGAAGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGGCTGTGGAGGAAGGGATTGAGAATAAAACCGTTGGGATTAAGAGGAAGACGTTGGATGACCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATAACGAGGATAAGCTCTTGAGGACTGTTTTCGTTGGGAATTTGCCCCTCAAGGTGAAAAAGAAGACTCTTTTGAAGGAGTTTAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCTATACAAGATACCAAGAAACCTAGGAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCGTACATTGTTTTCAAAACAGAGCAATCGGCACAGGCTTCTTTGGCACACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGCACTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTACAAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTATCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAACGGAACTTGAAGCTTCGTGACCGAGAGTTGAGACTCTGTCATGCCAAAGCAGATGCTACCCCGTCTaaaaggccaaacccatcatcagcacatgctcctagtacccccgcaaaaaggccaaacccatcagcacatgctcctagtacccctgcaaaGAAGTTTTCCGTGGCTTCACGGTCTCCATCAAGCAGTAATAACATGTCAAAATCAAACAGAAAAACCAACACATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCACAAGAAAATCCAAGGAGGAGAAAAACCAAAAGAACGCAAGACAAAAAGACCTTCAGTAGCTGCCAGAAAGGCTAAAGCAAACTTGGTCAAGCAGAGTGATCTACCAAAACAAGCAGGGATGAAACGCAAGGTTGATAGTCGTACTCCAGACAGCACCCTACGTAATAGGAAAGTAAAAAAGAACAGGTGGTAA 1551 0.4275 MGKKKQKNPQQSSETDAVSTPSSIFSKLFANAPEQTTATAAASLFSDDNPFRRKSAPLSYSTNRTQNPNNGDHPVNTDSSEEKKRKRTKDKTSAPAPDTVSVIEPLEEPGKKRKRDSDEGKDLSVGAEAIGKRKRKRDEVEKEWEEKKYGAVEEGIENKTVGIKRKTLDDPADMMVSKEGFDNEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLAHNMSLVEGNHIRVDRACPPRKKHKGESTPLYDNKRTVFVGNLPFDVKDEELYKLFCGISNLESSIEAIRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLCHAKADATPSKRPNPSSAHAPSTPAKRPNPSAHAPSTPAKKFSVASRSPSSSNNMSKSNRKTNTSYQGLRATKSDVHKKIQGGEKPKERKTKRPSVAARKAKANLVKQSDLPKQAGMKRKVDSRTPDSTLRNRKVKKNRW 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00151 516 MobiDBLite consensus disorder prediction 489 509 - -
Gma01g00151 516 MobiDBLite consensus disorder prediction 105 141 - -
Gma01g00151 516 MobiDBLite consensus disorder prediction 55 75 - -
Gma01g00151 516 PANTHER RNA-BINDING PROTEIN 34 43 513 - -
Gma01g00151 516 MobiDBLite consensus disorder prediction 379 516 - -
Gma01g00151 516 Gene3D - 294 388 IPR012677 -
Gma01g00151 516 MobiDBLite consensus disorder prediction 417 447 - -
Gma01g00151 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 283 IPR000504 GO:0003723
Gma01g00151 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 381 IPR000504 GO:0003723
Gma01g00151 516 SUPERFAMILY RNA-binding domain, RBD 296 390 IPR035979 GO:0003676
Gma01g00151 516 MobiDBLite consensus disorder prediction 386 400 - -
Gma01g00151 516 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 43 513 - -
Gma01g00151 516 SUPERFAMILY RNA-binding domain, RBD 182 289 IPR035979 GO:0003676
Gma01g00151 516 MobiDBLite consensus disorder prediction 40 141 - -
Gma01g00151 516 MobiDBLite consensus disorder prediction 76 93 - -
Gma01g00151 516 SMART rrm1_1 301 377 IPR000504 GO:0003723
Gma01g00151 516 SMART rrm1_1 190 279 IPR000504 GO:0003723
Gma01g00151 516 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g00151 516 CDD RRM2_RBM34 301 376 IPR034221 -
Gma01g00151 516 Gene3D - 182 293 IPR012677 -
Gma01g00151 516 CDD RRM1_RBM34 189 279 IPR034220 -
Gma01g00151 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 374 IPR000504 GO:0003723
Gma01g00151 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 233 IPR000504 GO:0003723
Gma01g00151 516 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00151 Gma-Chr1 1643182 1647992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00151 191 380 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 1.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00151 K14837 - gmx:100784494 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00151 01 1643182 1647992 Gma01g00151 01 1643182 1647992 ECH
Gma01g00151 01 1643182 1647992 Gma09g01910 09 44726628 44730397 GST