Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00143 ATGTCCAGGATGAGCATGTTATTTCAGGAGCTAAATGCATTGATGTTGATATTCCTTTTTTACGAAGTTACAATGATGAGAGACGCAACGAGAACTTCCTCAAAGAATAGCATGATTGTAACATTTGCTTTAGTGAATATGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTGCATGTATGATTCCTACTGGCCTTTTAAAACCCTTTCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATATTGGAAAAAACACTTGCATCAATGTCTGATGCTGTTTATTGTCCAAGCTTCAGATTTTGCAGGTTCTATTCCTCTGCTTCTTCTGCATTGATGTTAGAAGACCACGTGTTTGATGAAAGTCCAAAATCTCATTTTGTTATTAATAGGCCTGCACCTCATGTTCCCGCAACGAGGAGCGAGTTGTTTCCTTTAGTGTCTAGGGTGTTCAAATCACTGAGTTGGAGTGTGGCAAGAAAAAAAAAGTTTGGGAATTGGGTTGAGTGTCATGGGTTTTCTCATTCAATCAGTTGCTTTAGGATAATCGTTCATGCGTTTGCTTTGGCGGGGATGCGTTTGGAAGTGTGGGCTTTGCTTAGAGATATTGTTGGCTTCTGTAATGAGGCCAAGTATGATACCTTTGAATTGTTTTCAGCTTTTCTGGATTCACCCCAGCACGTGGAAAGATCCGGTGTTGTGTTTGATGTGCTCATAAGCGTGTTTGCATCCAACTCTATGCTGGAAAATGCTCTTGATGTGTTTTCGAATGCTAAGCATGTTGGGCTTGAGCCTGATATTAGGACTTGCAATTTCTTGCTGAAATGCTTGGTTGAGGCGAATAGAGTGGAGTTTGTTAGACGGGTTTTTGAGGAATTGAAGGACCGTGGTCCATCGCCAAATATCTACACTTATACAATCATGATGAATTTTTATTGTAGTGATGTTGGGTGTGATGCAGGTATGAGACAGGCTGCTGTGATTCTGGGAAAAATATATCGGAGTGGGGAAAAGCCAACTGTTGTCACATATAGTACTTATATTCATGGACTTTGTAAAGTTGGTAATGTTGAGGCTGCTCTGATGTTAATTCGCAACTTGCACTATACAAACCAGCCCCTCAATAGCCATTCTTTTAATGATGTAATTTATGGATTTTGTAAAAGAGGTGAAGTGTTTGAGGCTTTGCAAGTTTTGGAAGAAATGAAGAGCTCTGGGATATTACCAGATGTTTATAGCTACAGCATCTTAATTAATGCCTTCTGCGGGAAAGGTGATGTAATGAAATGTCTTGACTTGATGGAGGAAATGGAACACTCCCAGATAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGCAAGAAGAATATGTTACAAAATGCAGTGGATATATTCCATAGTATTGGTGCTTCTAGTTGCAAATATGATTCGACTGTTTATGAAACTTTAATTGATGGATTTTGCATGCAAGGTGATATGGATTCAGCCATCAAGCTTTTGGAGGAGATGATCTGCAACGAATTGGTTCCTACTGCTTTTAGTTGCCGCAGTCTAATTAGGGGATACTACAAACTGGGACTATTCGATCAGGCATTGGAAGTTTTTAATGCCATGCTACGAGATGGTATTTGGCCAGATACCATCGCTTGCAATTATATTCTTGATGGATCTTGCAGGGCAGGGTACTTCAAAGAAGCCTTGACACTGTTGGAGGACTTCCAAGAACATGGATTTAACCTCAACCCACATTCATATAATGCAATCATCTACAAACTTTGTAAAGAAGGTTATCCAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACTTCCCTCAGTTGTTAATTATAGTACTCTTATATCTGGCTTTGCCAAACAGTCAAATTTTAAAAGGGCCGTGAACTTATTCACGAGAATGGTAAAAGTGGGGATCACTTTCAACATTGCCACGTATACAATTCTTATGAGCATATTTAGCCATAGTCACAAAATGCATGAAGCATATGGAATTTTTAAGGAAATGAAAGAAAGGGGTTTATGTCTAGATCAGATTTCATATACAACTTTAATAGTTGGTTTTTGTAATAACAGAGAAATGAAAAAGGCCTGGGCATTATTTGAAGAAATGTCGAGGGAAGGCTGTTCGCCAAATGTAATTACTTATACTTGTATAATTGATGGATTTTGCAAGTCAAACCGGATAGATTTGGCCACTTGGGTGTTTGATAAAATGAACAGAGATTCAGTTATTCCTGATGTTGTGACTTACACCGTCCTCATTGATTGGTATCACAAGCATGGGTATTTCGATCAGGCACATAAGCTATATGATGTAATGAAGGATAAGGGTGTTTTGCCAGATGATATAACTCATAATGTTCTAGGTCTGAAAGCTGGCACAGTTCAAGAAGGAGGCATATTGAGTGGTAAAGAGAGTCAAATTTGGTCAGGAAGATGA 2520 0.3925 MSRMSMLFQELNALMLIFLFYEVTMMRDATRTSSKNSMIVTFALVNMQTFAQIHVKEGTVSNLQCPEAKCACMIPTGLLKPFLDDTDYERWESMILEKTLASMSDAVYCPSFRFCRFYSSASSALMLEDHVFDESPKSHFVINRPAPHVPATRSELFPLVSRVFKSLSWSVARKKKFGNWVECHGFSHSISCFRIIVHAFALAGMRLEVWALLRDIVGFCNEAKYDTFELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITHNVLGLKAGTVQEGGILSGKESQIWSGR 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00143 839 SUPERFAMILY HCP-like 506 728 - -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Gma01g00143 839 Pfam PPR repeat 349 377 IPR002885 -
Gma01g00143 839 Pfam PPR repeat 489 520 IPR002885 -
Gma01g00143 839 Pfam PPR repeat 455 483 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 218 333 IPR011990 GO:0005515
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 775 808 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 705 739 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 600 633 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 740 774 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 566 598 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 355 378 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 531 563 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 637 668 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Gma01g00143 839 TIGRFAM PPR: pentatricopeptide repeat domain 671 703 IPR002885 -
Gma01g00143 839 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 813 - -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 632 677 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 388 435 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 703 751 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 772 815 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 562 611 IPR002885 -
Gma01g00143 839 Pfam PPR repeat family 278 327 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 334 450 IPR011990 GO:0005515
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 608 733 IPR011990 GO:0005515
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 772 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Gma01g00143 839 Pfam PPR repeat 246 269 IPR002885 -
Gma01g00143 839 Pfam PPR repeat 531 560 IPR002885 -
Gma01g00143 839 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 113 813 - -
Gma01g00143 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 773 807 IPR002885 -
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 734 798 IPR011990 GO:0005515
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 523 594 IPR011990 GO:0005515
Gma01g00143 839 Gene3D Tetratricopeptide repeat domain 451 522 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00143 Gma-Chr1 1573536 1581338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00143 296 815 Glycosyltransferase AT1G05670 29.254 5.06e-68 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00143 - - gmx:100818511 1450.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00143 01 1573536 1581338 Gma01g00143 01 1573536 1581338 ECH
Gma01g00143 01 1573536 1581338 Gma09g01916 09 44792167 44795072 GST