Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00142 ATGGACGGCGGCGGGTCCACTCCGGCGGCGCCGATTCCGAACGCGAACGCGCCGCCGCCTTTTCTGAGCAAGACCTACGACATGGTGGAGGACCCTTCCACCGACGCGATCGTGTCGTGGAGCGCAACGAACAACAGCTTCATCGTGTGGGACCCTCCGCAGTTTGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACGGTTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAAGGGTCAAAAGCACTTGCTTAGGAGTATTACACGACGAAAACCTGCCCATGGTCAAAATCATCAACAGCCTCAGCAACCGCATGGACAGAGTTCATCGGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTTAAACAGGAAGGTATGGCTGAAACAGAGCATGCTGCTACTCCAGATGGACAAATTATTAAATATCAACCTATGGTGAATGAAGCAGCAAAAGCAATGCTTAGGCAGATCATGAAATGGGATACTTCTTGTGTAGAATCTTTGAATAAAAATTCTGATAACTACGTGATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGCAGCTCTTCAGGCTGGACTTCTGGAGTAACTCTTAAAGAGGTCTCTCCAGCTTCGGTGCAGTCTTCACATGTTCCAGCTGCAACTGGGACTCAAGGGCATGTCCCCTCAACCGTTAAACCTGAAATTTTATCTGTACCACAAGCAGTAGCTTCTGAAAAAGTTATGAAAGATGGAGCACATGATCCACCTTCTATCCCTGTGTCTCAAGCAGATGTAATGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATTCTTGATATTCCTGAAGAAAATTATATGGCAACTGAGACAGATGAGGGATACATGGATTCTTCATTGGGGGCTGGTGGGTCATTTCCCATTGATTTCGAAGGTATTTCACCTGATGCAGACATTGATGATTTGTTAGCCAATCCTATTTGGGATGAAATTTTGCAAACTTCAGTTCCAGAGGATATCGATACCAATGTGGCTGAAGCATCCAAAGGGAATGAGGTCCAACCAATGGAAAATGGATGGGGCAAAACTCAACATATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCCGATGCAAAAAGAGTTTGA 1473 0.461 MDGGGSTPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPQFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLKGQKHLLRSITRRKPAHGQNHQQPQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQEGMAETEHAATPDGQIIKYQPMVNEAAKAMLRQIMKWDTSCVESLNKNSDNYVIGDASSSSSGMDSSSSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVPSTVKPEILSVPQAVASEKVMKDGAHDPPSIPVSQADVMIPDLPPITEMVTGNILDIPEENYMATETDEGYMDSSLGAGGSFPIDFEGISPDADIDDLLANPIWDEILQTSVPEDIDTNVAEASKGNEVQPMENGWGKTQHMDHLTEQMGLLSSDAKRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00142 490 MobiDBLite consensus disorder prediction 111 130 - -
Gma01g00142 490 Gene3D - 14 111 IPR036388 -
Gma01g00142 490 Coils Coil 139 166 - -
Gma01g00142 490 MobiDBLite consensus disorder prediction 313 334 - -
Gma01g00142 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 476 IPR027725 -
Gma01g00142 490 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 MobiDBLite consensus disorder prediction 113 130 - -
Gma01g00142 490 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 11 476 - -
Gma01g00142 490 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g00142 490 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00142 Gma-Chr1 1562018 1565711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00142 2 484 HSF AT1G32330 54.028 1.33e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma01g00142 HSF_DNA-bind 6.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00142 K09419 - gmx:100815121 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00142 01 1562018 1565711 Gma01g00142 01 1562018 1565711 ECH
Gma01g00142 01 1562018 1565711 Gma09g01918 09 44805205 44808321 GST