Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00141 ATGCTTTCCTTACCAAAACCACATTCAGATTTTCCATTTCAAACACACATACCAGCAGTGCTGCCATCCCCATTTTCCCATGTAGATTCTTCTCCAGGCATCATCAAGGACCTTTCAGACCTTGAGAAACTAGCAGTTCTTGGCCATGGCAATGGCGGCATAGTCTACAAAGTTTATCACACGAAGAACCGTTCCTTTTATGCATTGAAGGTCTTACGCTTGAATGAGAATGGCATTGGCATCCTCGAGGCCGAGATTCTAAAACGAGTGAATTCGCCGTATATAGTAAGGTGTCATGCAGTTTTTGACAATGACAACTGCAGTGAGGGTGACATTGGCTTTGTCATGGAATACATGGAAGGAGGATCGTTGCACGATGTGTTGCAAGAACACCACAGGCTGCCAGAGGAGGTGATCTCGGTGTTGGCTAAGCGTGTTTTGGAAGGACTTAACTATCTGCATGGCATGCACATCGTCCATAGAGATATTAAACCCTCAAACTTACTTGTGAATGACAAGGGTGAGGTGAAGATTGCTGATTTTGGAGTAAGTCATGTAGTGGAAGGAAAGTTTGAGGTAAGCGACTCCAATGCAGGAACATGTGCCTATATGAGCCCGGAAAGGATTGATCCGGATAGATGGGGTGGTGAAAATGCAGACGAGTTTGCAGGAGATGTGTGGGCAACGGGAGTGGTGATGTTGGAATGCTTTTTGGGTTATTTTCCGTTGATCGGTCCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAAAAAGCATCGCCAGAGTTTCAAAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGAAAGAGAGCAACAGTTTTAGAGCTTCTTCACCACCCTTTTGTGGGTAGAAACTGTTGCTGTTCCAGTACAGGGCTTGGAGATTATGTTCTTCGGGGTCAAGTTCACTAG 972 0.4547 MLSLPKPHSDFPFQTHIPAVLPSPFSHVDSSPGIIKDLSDLEKLAVLGHGNGGIVYKVYHTKNRSFYALKVLRLNENGIGILEAEILKRVNSPYIVRCHAVFDNDNCSEGDIGFVMEYMEGGSLHDVLQEHHRLPEEVISVLAKRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGKFEVSDSNAGTCAYMSPERIDPDRWGGENADEFAGDVWATGVVMLECFLGYFPLIGPGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVGRNCCCSSTGLGDYVLRGQVH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00141 323 Gene3D Transferase(Phosphotransferase) domain 1 116 312 - -
Gma01g00141 323 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 305 IPR045269 GO:0004674|GO:0006914
Gma01g00141 323 SMART serkin_6 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00141 323 Pfam Protein kinase domain 42 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00141 323 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Gma01g00141 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Gma01g00141 323 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 3 305 - -
Gma01g00141 323 CDD PKc_MAPKK_plant_like 39 307 - -
Gma01g00141 323 SUPERFAMILY Protein kinase-like (PK-like) 33 303 IPR011009 -
Gma01g00141 323 Gene3D Phosphorylase Kinase; domain 1 26 115 - -
Gma01g00141 323 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00141 Gma-Chr1 1558529 1559500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00141 29 302 MAP Kinase Kinase Gene Family AT1G32320 56.569 6.18e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gma01g00141 Pkinase 3.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00141 K20604 - gmx:100817973 676.781