Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00139 ATGAGCTTTCAGGACATCGAGGCCGGCCGTTCCTTCGCTTCCCGGCGAAATCTAATCAACGGCAAACAAGACCCCACGCAGGCGGTGGCTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCAGCGGAGAGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGTCGCAGATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCAATGATTGATGATATCGGGTCCAATATTGAGCATTCCCATGAAGCAACTGCGCAAGCAAAATCTCAACTTGCCAAAGCTTCAAAGACGCAAAGATCAAATTCATCTTTGACATGCTTGCTTCTGGTGATATTCGGGATCGTGCTTCTAATCGTCATCATTGTTCTTGCTGCTTAG 822 0.4647 MSFQDIEAGRSFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQALLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDNEISFNEAIIEEREQGIQEIQSQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00139 273 SUPERFAMILY t-snare proteins 22 235 IPR010989 GO:0016020|GO:0016192
Gma01g00139 273 SMART tSNARE_6 175 242 IPR000727 -
Gma01g00139 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Gma01g00139 273 CDD SNARE_Qa 183 241 - -
Gma01g00139 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Gma01g00139 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Gma01g00139 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Gma01g00139 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Gma01g00139 273 Gene3D - 20 133 - -
Gma01g00139 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma01g00139 273 CDD SynN 23 148 IPR006011 GO:0016020
Gma01g00139 273 Pfam SNARE domain 217 268 IPR000727 -
Gma01g00139 273 Gene3D - 174 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00139 Gma-Chr1 1546798 1552068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00139 1 261 SNARE and Associated Proteins AT5G46860 77.395 1.64e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00139 - K08488 gmx:100810149 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00139 01 1546798 1552068 Gma01g00139 01 1546798 1552068 ECH
Gma01g00139 01 1546798 1552068 Gma09g01920 09 44817849 44822437 GST
Gma01g00139 01 1546798 1552068 Gma16g00834 16 14807314 14810601 PCT
Gma16g00834 16 14807314 14810601 Gma01g00139 01 1546798 1552068 PCT