Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00129 ATGGTGGAAAGAAGAGTGACTTTATCAAAGGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCAAAATTTGTCACTGCCACCCAGACAAGTGTTGCTAACATGATGAGCAGAAGTGGAAATGCTTTAAGAGCTTCAGCATCATGTGGCCCAAGATTTCATGGTAATGCTAATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGATTGGACTGATAAAATTCTAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTAATTTATTTGCAAAAGATTGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCCCCTTTGAGTGCTTCAGTACCTGCTGGGGTTGTTTTAATGAAAGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGCGATTTTGAGAAAATGGCAAACAAGGTATTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATATTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCAGCTTGGGAACAGCAAATGGAACTTGAAGAAACTTTCAAGGTTGCCCAAATCGATTTTGCGGCTGTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATCTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCATCACTGTGGGGCATCAAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTGTACAAGGCTGTTCAAAAGCCAGGGGAGTTTATAATAACGTTCCCTAGGGCATATCACGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTGTTGCTAGCAGAAGATATGCACTTCTTAACAGGGTACCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCGTACATGCTTGGAACTTGAAGATTCTGACTTTCCTTCTCCAGACTTGTTTTCTCATAATAGTATTAAGATTTCATTTGTTAACTTGATGCGTTTCCAACATCGTGCTCGATGGTTCCTTACGAAATCAAGGGCGGGTATAAGTGTTTCTTTTCATTCCCATGGCACGATTCTCTGTAGCCTCTGCAAACGTGACTGTTACATAGCTTATGTTGGCTGCAACTGTCACAAGCATCATGTATGCCTACGTCATGATGCTGATTCTCTTGACTTCAACTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAAGGAAGCAAACTAAAAGTGACCAGAACATGTATGCATATCCTTTGTCAAATATGTTTCAGGGAGCCGAGGCAAATGGATACACGCCTTATTGTGAGCTAAAACTTGATTCTGTTGCTGAATTTTATGCAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTTCACAATATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAAAACCAGTGGTGTCTGAGGTTTCCTTTTCTTCTGCCACATCCACTCTTTGTTCTCTTTCAGAATCTCTTGAGAGCTTTTCCGCTCCCAAAAATCAGGCTGAGGAGCATATTAACATCAATGCAACAAGTATTATTGATTTTGAAGAGTTTGCTGAAAGAATATCCAACAGTGCTTGTGAATCTTCATTATCTCCTGCTGTGTATCATGAAAGGTCGGTTAAACCACGGGGTGATCTTCAGAGATTTGATAAAAAACCCGTTGTAAATGAGAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAACGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGCTATGTCTTCAAAACATACTGCGCAGCAGGGACTTAAACGACTGAAGAAAATCCTTCCTGAAGGAAAGAGCGGGCAACCAATGGATTTCAGTAGAAGCAATGAATCAAGTTACAAATACGGTCACCCTGTTAACCATAAAGGTCATGCTGAAATTTCGTCTAGGGACAGATTTGCAACGGGTAATGGTATTCCCATTTCTATAAGATGTAAGAAGTTAGGCAACGAGGAAATAAGCATGCAACGAGATCACAACCGGAGAGATAGGTTGCAGCAGACATTTAGGGAACCACCTTCCATGGAGCTTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGCAGATCGAATTGA 2577 0.4086 MVERRVTLSKEARNGLEFLKRKRLQRAKFVTATQTSVANMMSRSGNALRASASCGPRFHGNANVFSKRKVDKFDTNDLDWTDKILECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETSIPGVTEPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSPDLFSHNSIKISFVNLMRFQHRARWFLTKSRAGISVSFHSHGTILCSLCKRDCYIAYVGCNCHKHHVCLRHDADSLDFNCGSKHTLYLREDIMDMEAAAKMFEQEDGILDEIRKQTKSDQNMYAYPLSNMFQGAEANGYTPYCELKLDSVAEFYATPEHSTNNQEYSSQYQSVFVHCSENQKPVVSEVSFSSATSTLCSLSESLESFSAPKNQAEEHININATSIIDFEEFAERISNSACESSLSPAVYHERSVKPRGDLQRFDKKPVVNESDDSDSEIFRVKRPSSLKAERRNMNDAMSSKHTAQQGLKRLKKILPEGKSGQPMDFSRSNESSYKYGHPVNHKGHAEISSRDRFATGNGIPISIRCKKLGNEEISMQRDHNRRDRLQQTFREPPSMELEPKRLKVRGPSFLGLESSRSN 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00129 858 SMART cupin_9 231 404 IPR003347 -
Gma01g00129 858 MobiDBLite consensus disorder prediction 812 843 - -
Gma01g00129 858 MobiDBLite consensus disorder prediction 696 774 - -
Gma01g00129 858 Gene3D Cupin 87 435 - -
Gma01g00129 858 ProSiteProfiles JmjC domain profile. 234 404 IPR003347 -
Gma01g00129 858 MobiDBLite consensus disorder prediction 812 858 - -
Gma01g00129 858 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 55 853 - -
Gma01g00129 858 MobiDBLite consensus disorder prediction 696 736 - -
Gma01g00129 858 SMART JmjN_1 86 127 IPR003349 -
Gma01g00129 858 ProSiteProfiles JmjN domain profile. 87 128 IPR003349 -
Gma01g00129 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 55 853 - -
Gma01g00129 858 Pfam C5HC2 zinc finger 484 535 IPR004198 -
Gma01g00129 858 Pfam jmjN domain 88 120 IPR003349 -
Gma01g00129 858 Pfam JmjC domain, hydroxylase 264 387 IPR003347 -
Gma01g00129 858 SUPERFAMILY Clavaminate synthase-like 165 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00129 Gma-Chr1 1453467 1460032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00129 84 543 JUMONJI Transcription Factor Family AT2G34880 33.083 3.56e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma01g00129 JmjC 3.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00129 - - gmx:100306287 1727.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00129 01 1453467 1460032 Gma01g00129 01 1453467 1460032 ECH
Gma01g00129 01 1453467 1460032 Gma09g01929 09 44898910 44905700 GST