Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00127 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTAAACTCAGACACTCTCTTCTCCTCCTCGATCCAGAACTCTAGCTTCAACTTCATCCCCACCATGCCCTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATCTTGCGAGGGAAGGAAGAGATGGAAAGTGGATCAGGAAGTGAACAATTAGTTGAAGACAAATCAGGGTATGAACAAGAGAGTCATGAAGAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAATCTTTGTTCAAGGAATGCCCACACCCGGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGTCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGACCGGGCAGATAATATGATACTTAGAGCTGAGAATGAGACTCTAAAGAGTGAGAATTATCGGTTACAAGCTGCACTGCGTAACGTTATTTGTCCCAACTGTGGTGGCCCGTGCATAATGGGTGCTGATATGGGTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAACAATGGCAGCAGATCCTACTCTAATGGCCCCTTCATTGGATTTGGACATGAACATGTACCCAAGGCACTTTTCGGATCCCATTGCTCCATGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCGTTTTCTGAGGGTGGTGTTTTAATGGAAGAAGAGAAGTCTCTGGCCTTGGAGCTTGCGGCTTCCTCTATGGCTGAACTTGTGAAGATGTGTCAGACAAATGAACCACTTTGGATCCAAAGCAGTGAGGGTGAAAGGGAAGTGCTCAATTTTGAAGAGCATGCAAGAATGTTTGTTTGGCCTCAGAATCTCAAGAACCGAAGTGAGCTAAGGACAGAAGCTAGCCGTGACACTTCTGTGGTTATAATTAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCTTGCAAGCGGGACTCTTCAGCTGATGTGCGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGATATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTACCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTGGAGCATGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCTGCAATTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTCGCAAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGATGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGTACCTCTGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCAGTTTCAACCACTTGGTTGCCCTATTCTCACACCAAGGTCTTTGATCTCCTCAGGGATGAACGCCACAGATCTCAGATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAATCTGGAAGCCTAGTAGTGTACACAACCATCGACGTGGATGCGATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCACTTCTTCCCCAAGGCTTCAAGATAGTGCCAATGCTATCATCACCCATCACCGATACAACAAACTCATCAGAGCCTCCAATATCTCTCAACAACAACTCAGGTGGTTGCCTCTTAACAATGGGGGTGCAGGTTCTCGCGAGCACAATCCCTTCTGCAAAGCTCAACCTCTCGAGCGTCACCGCCATCAACAACCACCTTTGCAACACCTTGCACCAGATTGAAGCTGCTCTTTCTTCTACTAACTCCCATGAGAACGGCTTCTTCCTTTGCACTGAACCCACCAAGCAGTGA 2370 0.4591 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSSFNFIPTMPFQPFPSMKEEDGILRGKEEMESGSGSEQLVEDKSGYEQESHEEPTKKKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNMILRAENETLKSENYRLQAALRNVICPNCGGPCIMGADMGFDEHQLRIENARLREELERVCCLTTRYTGRPIQTMAADPTLMAPSLDLDMNMYPRHFSDPIAPCTEMIPVPMLPPEASPFSEGGVLMEEEKSLALELAASSMAELVKMCQTNEPLWIQSSEGEREVLNFEEHARMFVWPQNLKNRSELRTEASRDTSVVIINSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGLASGTLQLMCAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPDARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDTLSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDAIQLAMSGEDPSCIALLPQGFKIVPMLSSPITDTTNSSEPPISLNNNSGGCLLTMGVQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSTNSHENGFFLCTEPTKQ 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00127 789 SMART HOX_1 84 147 IPR001356 GO:0003677
Gma01g00127 789 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gma01g00127 789 MobiDBLite consensus disorder prediction 56 85 - -
Gma01g00127 789 SUPERFAMILY Bet v1-like 277 512 - -
Gma01g00127 789 CDD homeodomain 86 144 IPR001356 GO:0003677
Gma01g00127 789 SUPERFAMILY Homeodomain-like 74 144 IPR009057 -
Gma01g00127 789 SMART START_1 285 510 IPR002913 GO:0008289
Gma01g00127 789 CDD START_ArGLABRA2_like 280 509 - -
Gma01g00127 789 Pfam START domain 286 510 IPR002913 GO:0008289
Gma01g00127 789 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Gma01g00127 789 Gene3D - 70 156 - -
Gma01g00127 789 Gene3D - 286 494 IPR023393 -
Gma01g00127 789 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 778 IPR042160 -
Gma01g00127 789 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Gma01g00127 789 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Gma01g00127 789 MobiDBLite consensus disorder prediction 56 91 - -
Gma01g00127 789 PANTHER - 63 778 - -
Gma01g00127 789 SUPERFAMILY Bet v1-like 537 767 - -
Gma01g00127 789 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00127 Gma-Chr1 1429912 1435617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00127 8 773 Homeobox Transcription Factor Family AT5G46880 56.867 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma01g00127 START 1.3e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00127 - - gmx:100793658 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00127 01 1429912 1435617 Gma01g00127 01 1429912 1435617 ECH
Gma01g00127 01 1429912 1435617 Gma10g02254 10 50103897 50109347 ECH
Gma01g00127 01 1429912 1435617 Gma09g01930 09 44920117 44926321 GST