Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00117 ATGGGCAGCAGTGAGATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCGCCACCACCACCTACGTCACAGGAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAATTCTCAAAATGACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACCGTTGGATCTCGGGATAGTGCTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGTAGGTCCAGGTTGCGAAAGCAGgctgagtgtgatgagttagctcagcgtgctgaggctttgaaggaagaaaatgcttctctccggtctgaagtaaatcgaatcaggagtgattatgagcagctagtctccgagaattcagctctcaagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGGCCATGCCGGGCGGTCAGTAG 1248 0.4263 MGSSEMDKTPKEKESKTPPPPPTSQEQSSTTSTGTINPEWPGFQAYSPIPPHGFLASNPQAHPYMWGVQQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSLAYTAQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALGRKVPSTAVAGGMVTVGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLVSENSALKERLGELPANDDHHRSCRNDQHVGNDTQQSGQTEAMPGGQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00117 415 MobiDBLite consensus disorder prediction 397 415 - -
Gma01g00117 415 MobiDBLite consensus disorder prediction 1 15 - -
Gma01g00117 415 Pfam G-box binding protein MFMR 1 99 IPR012900 -
Gma01g00117 415 Gene3D - 313 367 - -
Gma01g00117 415 Pfam bZIP transcription factor 310 372 IPR004827 GO:0003700|GO:0006355
Gma01g00117 415 Pfam Disordered region downstream of MFMR 138 277 - -
Gma01g00117 415 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 413 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gma01g00117 415 Coils Coil 330 378 - -
Gma01g00117 415 CDD bZIP_plant_GBF1 315 365 IPR045314 GO:0003700|GO:0006355
Gma01g00117 415 MobiDBLite consensus disorder prediction 380 396 - -
Gma01g00117 415 SMART brlzneu 310 374 IPR004827 GO:0003700|GO:0006355
Gma01g00117 415 MobiDBLite consensus disorder prediction 149 226 - -
Gma01g00117 415 MobiDBLite consensus disorder prediction 114 226 - -
Gma01g00117 415 MobiDBLite consensus disorder prediction 312 336 - -
Gma01g00117 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 317 332 IPR004827 GO:0003700|GO:0006355
Gma01g00117 415 MobiDBLite consensus disorder prediction 376 415 - -
Gma01g00117 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 312 375 IPR004827 GO:0003700|GO:0006355
Gma01g00117 415 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 413 - -
Gma01g00117 415 MobiDBLite consensus disorder prediction 26 40 - -
Gma01g00117 415 MobiDBLite consensus disorder prediction 1 44 - -
Gma01g00117 415 SUPERFAMILY Leucine zipper domain 313 369 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00117 Gma-Chr1 1326732 1335747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00117 1 409 bZIP Transcription Factor Family AT2G35530 63.043 1.70e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma01g00117 MFMR_assoc 1.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00117 K09060 - gmx:100101882 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00117 01 1326732 1335747 Gma01g00117 01 1326732 1335747 ECH
Gma01g00117 01 1326732 1335747 Gma09g01939 09 45010224 45019110 GST