Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00094 ATGGCAGCTTGCACTGTCTACTCAACACAATCTCTGAGCACAAATTGCTCCATCTCAACCCCATCAAAGACGCAACTCAGTTTTTTCCACCAAAAGCAGGTAGTTTTCTGGAGGAACAGCAAGAAGGGCAGCTGCAGCAGCAGAAGAAGCTATGTGATAACATGTGCAGCAGGTGACTCACAGACAGTGGTGATTGGCCTGGCTGCAGACTCAGGGTGTGGGAAGAGCACCTTCATGAGGAGGCTGACCAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGTGGCAACCCTGACTCCAACACTCTCATCAGTGACACCACCACTGTCATATGCTTGGATGATTACCACTCTTTGGACAGAACTGGAAGAAAGGAGAAGGGTGTCACTGCCCTTGACCCTAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAAGCTCTTAAGGATGGAATTGCTGTTGAAAAACCAATCTACAACCATGTCACTGGTCTCTTGGATCCCCCTGAGCTCATTAAACCCCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCCCGTGTCAGAGATCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTCAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGAAGCATATATTGATCCACAAAAGCAATACGCAGATGCAGTGATAGAAGTGTTGCCAACGCAACTCATTCCAGATGACAACGAGGGTAAGATTTTGAGAGTGAGATTGATACAGAAAGAGGGGGTTAAGTACTTTAGCCCGGTTTACTTGTTTGATGATGGCTCTACCATTTCATGGATACCATGTGGAAGAAAGCTTACATGCTCCTACCCTGGCATCAAATTCTTCTATGGACCTGAGACTTACTACGGAAATGAGGTGTCAGTTGTAGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATACGTTGAGAGCCACCTAAGCAACCTCTCTACAAAGTTCTATGGAGAGGTTACTCAACAGATGTTGAAGCATGCTGATTTTCCCGGCAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAGCAGCTAATAGCCAGCAAGGCTGAGACTCCAGTAGCTGCAAAAGCTTAG 1224 0.4518 MAACTVYSTQSLSTNCSISTPSKTQLSFFHQKQVVFWRNSKKGSCSSRRSYVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPETYYGNEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIASKAETPVAAKA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00094 407 PANTHER URIDINE KINASE 6 406 - -
Gma01g00094 407 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gma01g00094 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Gma01g00094 407 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Gma01g00094 407 Gene3D - 59 294 IPR027417 -
Gma01g00094 407 CDD PRK 64 353 - -
Gma01g00094 407 PANTHER PHOSPHORIBULOKINASE 6 406 - -
Gma01g00094 407 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gma01g00094 407 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gma01g00094 407 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Gma01g00094 407 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00094 Gma-Chr1 1024291 1028734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00094 116 290 PRT Gene Family AT3G27440 26.404 1.42e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00094 K00855 - gmx:100777515 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00094 01 1024291 1028734 Gma01g00094 01 1024291 1028734 ECH
Gma01g00094 01 1024291 1028734 Gma09g01958 09 45212571 45217029 GST