Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00068 ATGGAACTATTCACCTCATCATGTCTTAAATTTCTATTTCACTCTCTTGTGATCTTATTCGTCCTCTTTAACCATGCAAACTCTCAGTCTCAGTTGCATGATCAAGAACGTGCAACTTTACTGAAGATAAAGGAATACCTTGAAAACCCTGAATTCCTTAGTCACTGGACTCCATCAAGCTCCTCTCACTGCTCATGGCCAGAGATAAAATGCACCTCCGATGGCTCAGTCACTGGATTGACTTTGTCCAACAGCAGCATCACTCAAACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACAGTTGTTGATTTCTACAACAATTACATTCCCGGGGAGTTCCCAACAACTCTCTACAATTGCTCCAAGTTGGAGTACCTAGACCTGTCCCAGAACAACTTTGTTGGTAGCATCCCTCATGACATTGACAGACTCTCTAATTTACAGTATCTCAGCCTTGGTTACACCAATTTCTCTGGTGACATTCCTGCAAGCATTGGAAGGCTAAAGGAACTCAGAAATCTTCAATTTCAAAACAGTCTTTTGAATGGAACATTCCCTGCTGAGATTGGCAACTTGTCCAATCTTGACACCTTGGACTTGTCCTCTAACAACATGCTCCCTCCTTCGAGGTTGCACGATGACTGGACCCGGCTGAACAAGTTGAAGTTTTTTTTTATGTTTCAGTCCAACTTGGTTGGGGAGATCCCTGAAACCATTGTAAACATGGTGGCTTTGGAGAGATTGGATCTATCGCAAAACAATTTGAGTGGACCGATTCCTGGCGGTTTGTTCATGCTGGAGAATCTGAGCATAATGTTTCTTTCTAGAAACAATCTTTCAGGGGAAATACCTGATGTGGTTGAAGCATTGAATTTGACCATCATTGATCTCACTCGGAATTTCATCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTCCAAAAGTTAACTGGTTTGGCTTTGTCTATTAATAACTTGGAAGGGGagataccagcaagcataggacttcttccatctctggtagattttaaagtgtttttcaacaatTTATCAGGTATTCTTCCTCCTGATTTTGGTCGCTACTCAAAGCTTGAAACATTTTTGGTTGCAAATAATAGTTTTAGTGGAAAGCTACCAGAGAACTTATGCTATAACGGTCACTTGCTTAATATATCTGTGTATGAAAATTATCTGAGTGGGGAATTGCCACAATCACTTGGGAATTGTAGTAGCCTCATGGAACTGAAAATCTATAGCAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTAAACTTGTCAAATTTCATGGTGAGTCATAATAAGTTCACCGGTGAGCTTCCTGAGAGATTGTCCTCAAGTATTTCGCGCTTGGAGATAGATTACAATCAATTTTCTGGTAGAATTCCAACTGGGGTATCTTCATGGACTAATGTGGTAGTGTTTAAAGCCAGTGAGAACTACCTTAATGGGAGTATTCCAAAAGAGTTAACAGCTCTTCCCAAGCTAAATATTTTATTGCTTGATCAGAACCAGCTCACAGGGTCACTTCCGTCAGATATAATATCATGGCAGTCCCTTGTAACTCTAAATTtgagccaaaaccaactctctggacatatcccagattcaattggtctgttacctgtccttacgatacttgacctgtcagaaaatcaattgtctggtgatgttccttctatacttcccagactcaccaatctcaatctatcctccaattatttgacagggagggttccaagtgaatttgacaatcctgcttatgacaccagctttttggacaattctggcctctgtgctgataccccggcactgagccTCAGATTGTGCAATTCTAGCCCTCAAAGCCAAAGCAAGGACTCATCTTGGTCTCCTGCTTTGATTATAAGCCTTGTGGCAGTGGCCTGCTTGCTGGCTTTGTTGACATCACTCTTGATCATCAGATTTTACAGAAAAAGAAAGCAAGTATTGGATAGATCATGGAAGCTCATTTCCTTCCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCACTGACAGAAAATAATATTATTGGCAGTGGCGGATATGGTGCAGTATACCGTGTTGCAGTTGATGGTTTAGGCTATATTGCTGTGAAGAAGATTTGGGAAAACAAGAAGTTAGATAAAAATCTTGAGAGCTCATTTCACACTGAAGTTAAGATATTGAGCAACATTCGCCACAGAAACATTGTGAAATTGATGTGCTGTATCTCTAATGAGGACTCTATGCTCCTTGTCTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACCGGAAGAATAAGTCATCAGCTGTGTCAGGTTCAGTCCATCATGTTGTCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTGAGCTACATGCATCATGATTGCTCACCACCTATTGTTCATCGAGATGTGAAAACAAGTAACATTCTTTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGGGAACTTGCCACCATGTCATCTGTGATCGGCTCATTTGGCTATATAGCTCCAGAATATGCTAAAACAACTCGAGTCAGCGAAAAGATTGATGTGTTCAGCTTTGGAGTTATCCTATTAGAACTGACAACTGGTAAGGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGCCACCAGCAGTTAGGAAGCAACATAGAAGAGCTGCTAGACAAGGATGTCATGGAAACCAGTTACTTGGATGGAATGTGTAAGGTTTTCAAACTAGGGATCATGTGCTCTGCAACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTTCTACAAATATTGCTTTCTTGTGAAGATTCATTTTCCAAAGGAGAGAGCATTATTGGCCACTATGATGATGTTCCCCTTCTCAAAAATTCAAAAAGAGAGCATAAGTTGGATATTGATAATGATAGCTAG 3033 0.3673 MELFTSSCLKFLFHSLVILFVLFNHANSQSQLHDQERATLLKIKEYLENPEFLSHWTPSSSSHCSWPEIKCTSDGSVTGLTLSNSSITQTIPSFICDLKNLTVVDFYNNYIPGEFPTTLYNCSKLEYLDLSQNNFVGSIPHDIDRLSNLQYLSLGYTNFSGDIPASIGRLKELRNLQFQNSLLNGTFPAEIGNLSNLDTLDLSSNNMLPPSRLHDDWTRLNKLKFFFMFQSNLVGEIPETIVNMVALERLDLSQNNLSGPIPGGLFMLENLSIMFLSRNNLSGEIPDVVEALNLTIIDLTRNFISGKIPDGFGKLQKLTGLALSINNLEGEIPASIGLLPSLVDFKVFFNNLSGILPPDFGRYSKLETFLVANNSFSGKLPENLCYNGHLLNISVYENYLSGELPQSLGNCSSLMELKIYSNEFSGSIPSGLWTLNLSNFMVSHNKFTGELPERLSSSISRLEIDYNQFSGRIPTGVSSWTNVVVFKASENYLNGSIPKELTALPKLNILLLDQNQLTGSLPSDIISWQSLVTLNLSQNQLSGHIPDSIGLLPVLTILDLSENQLSGDVPSILPRLTNLNLSSNYLTGRVPSEFDNPAYDTSFLDNSGLCADTPALSLRLCNSSPQSQSKDSSWSPALIISLVAVACLLALLTSLLIIRFYRKRKQVLDRSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRVAVDGLGYIAVKKIWENKKLDKNLESSFHTEVKILSNIRHRNIVKLMCCISNEDSMLLVYEYVENRSLDRWLHRKNKSSAVSGSVHHVVLDWPKRLHIAIGAAQGLSYMHHDCSPPIVHRDVKTSNILLDSQFNAKVADFGLARMLMKPGELATMSSVIGSFGYIAPEYAKTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHQQLGSNIEELLDKDVMETSYLDGMCKVFKLGIMCSATLPSSRPSMKEVLQILLSCEDSFSKGESIIGHYDDVPLLKNSKREHKLDIDNDS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00068 1010 Gene3D Ribonuclease Inhibitor 33 211 IPR032675 -
Gma01g00068 1010 SMART LRR_typ_2 146 170 IPR003591 -
Gma01g00068 1010 SMART LRR_typ_2 315 339 IPR003591 -
Gma01g00068 1010 SMART LRR_typ_2 194 220 IPR003591 -
Gma01g00068 1010 SMART LRR_typ_2 504 528 IPR003591 -
Gma01g00068 1010 SMART LRR_typ_2 552 580 IPR003591 -
Gma01g00068 1010 SMART LRR_typ_2 244 268 IPR003591 -
Gma01g00068 1010 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Gma01g00068 1010 Gene3D Ribonuclease Inhibitor 435 618 IPR032675 -
Gma01g00068 1010 SUPERFAMILY RNI-like 292 591 - -
Gma01g00068 1010 ProSiteProfiles Protein kinase domain profile. 691 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00068 1010 SUPERFAMILY Protein kinase-like (PK-like) 684 972 IPR011009 -
Gma01g00068 1010 Gene3D Phosphorylase Kinase; domain 1 668 769 - -
Gma01g00068 1010 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1003 - -
Gma01g00068 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1003 - -
Gma01g00068 1010 SMART serkin_6 691 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00068 1010 PRINTS Leucine-rich repeat signature 247 260 - -
Gma01g00068 1010 PRINTS Leucine-rich repeat signature 552 565 - -
Gma01g00068 1010 Gene3D Transferase(Phosphotransferase) domain 1 770 987 - -
Gma01g00068 1010 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Gma01g00068 1010 Pfam Leucine rich repeat 78 135 IPR001611 GO:0005515
Gma01g00068 1010 Pfam Protein kinase domain 693 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00068 1010 ProSiteProfiles Leucine-rich repeat profile. 530 552 IPR001611 GO:0005515
Gma01g00068 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Gma01g00068 1010 CDD STKc_IRAK 697 972 - -
Gma01g00068 1010 SUPERFAMILY L domain-like 45 376 - -
Gma01g00068 1010 Gene3D Ribonuclease Inhibitor 212 434 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00068 Gma-Chr1 770182 773925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00068 30 972 Receptor kinase-like Gene Family AT5G25930 52.461 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma01g00068 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00068 - - gmx:100798963 1940.62