Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00061 ATGTCAAACTTGCATTACATGTTCATCTTGTTTGCAGTTCTTCTTGTGCAAAATCCCAGTAGAATACATTGCCATACCAAGGGAATTAGACCAAGACTTTCTGCAGGTAAAGGGTTATCGACCAACATAACTAGAGTGCAGTATTCTGAACAGCAATTCATGAAATGGGTGAATTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGTCAGCTAAAAATAAGCTTGTGGCTTCTTACACTTTGCACGTTGATAAGGATCCTGGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTTGTGAGAGTGGTCATAAAAGTCCATGCAGGGGTCTACACGGAGAAAGTTAATATTCCTCCTTTGAAATCCTACATAACAATAGAAGGAGCTGGTACAGATAAAACCATTGTTAAATGGGGTGACACTGCTCAAACACCTGGCCCAAATGGGAGGCCACTAGGAACCTATGGTTCGGCAACTTTTGCTGTGAATTCACCTTATTTCCTTGCTAAGAACATCACGTTCCAAAACACAACTCCAGTTCCTGCACCAGGAGCAGTTGGAAAGCAAGCGGTGGCATTGAGGATTTCAGCAGACACAGCAGCATTTGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTTTATGATCATTTGGGCAGACATTACTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTCGGCAACTCTCTCTCACTGTTTGAGGGATGTCACGTGCATGCCATAGCACAGAATACAGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCTTGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACATTTATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGGGATCCTAACCGTGAAATGACTGTATTCTATGGGCAGTACAAATGCACAGGACTTGGAGCAAGTTTTGCAGGGAGAGTACCATGGTCCAGAGAGCTTACTGACGAGGAAGCTGCACCTTTTCTTTCACTTAGCTTTATTGATGGAACCGAATGGATCAAAGTGTAG 1140 0.4368 MSNLHYMFILFAVLLVQNPSRIHCHTKGIRPRLSAGKGLSTNITRVQYSEQQFMKWVNFVGSLKHSVFKSAKNKLVASYTLHVDKDPGAGDFTSIQEAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSYITIEGAGTDKTIVKWGDTAQTPGPNGRPLGTYGSATFAVNSPYFLAKNITFQNTTPVPAPGAVGKQAVALRISADTAAFVGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTFMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGLGASFAGRVPWSRELTDEEAAPFLSLSFIDGTEWIKV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00061 379 PANTHER PECTINESTERASE 6 378 - -
Gma01g00061 379 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Gma01g00061 379 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 378 - -
Gma01g00061 379 Pfam Pectinesterase 87 373 IPR000070 GO:0030599|GO:0042545
Gma01g00061 379 Gene3D - 76 379 IPR012334 -
Gma01g00061 379 SUPERFAMILY Pectin lyase-like 76 378 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00061 Gma-Chr1 686309 690880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00061 2 377 Carbohydrate Esterase AT5G47500 43.767 3.39e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00061 K01051 - gmx:100793314 780.785