Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00050 ATGTTTCTTGAAATTGTGAGAAATCGCAAACAAATACAGCCGATTCAACCACAATTATGGTCTCGTTGCAGGCACAAACACTTACAAATTCTTGACGTTGTGGTCAAAATCAAGAAATTTACATTCAAAGGAAGTCAACATCTGTACAGAAAAAGTTGTACAAAGCTAAAAATGGAGAATAGCTGCATTCTAGCTTTTCTCCTCCTCATTCTCCACTCAAGTACAACAAAAGCTGCCTTCAgtgttggtggtggagttggtgtaggtgttggtgttggtgttggtgttggCAATGGGAATGGTGGTGGTGATGGTGGCAGTGGTGGAGTGGTTTGGGTTGGTGGAGGGATTAACAGCCCAGAGCCACCTAGATCCTCAGTGCCAAATCTTGAAGGAGCTTACACAGCACTTCAGGCATGGAAATCTGCAATCACTGAGGACCCTCTTAAGATTTTATCAAGTTGGGTTGGTCCTAATGTGTGTGCTTACAAAGGAGTCTTCTGTGCAAACCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTAGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACCCTTGTGAAGGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACAGTAACAGATTCACAGGCACTGTTCCTGATACATTCAGAGACCTGGTTTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTCTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCAGGCCTCATCTACTTGGACCTCAGATTCAACTACTTTTCTGGGGCCCTCCCTCAGGAACTTTTCAGCAAGAACCTTGATGCATTATTCCTCAATAACAACCAGTTTGAAGGTGAAATCCCCCAAAACTTGGGCAGTTCCCCAGCCTCAGTGATAAACTTAGCCAACAACAAGTTGAGTGGTAGCATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGCTGCATTCCTGAGGGAGTTGGGCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTCATGGGTCATTTGCCAGACACACTGTCATGCCTGCAAGACATAGAAGTTCTCAATTTGGCTCATAACAAGCTCTCTGGGGAATTATCAGATGTAGTGTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTTGGTTTTGATTTCTCACTAAACTGCATTCCTGATAGGGACATGCAGAGACCTCCACCTGAGTGCTCTGGCATCCCAGGTGGAAGTCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCACTTCACCATCTCCTCCTTGA 1455 0.4296 MFLEIVRNRKQIQPIQPQLWSRCRHKHLQILDVVVKIKKFTFKGSQHLYRKSCTKLKMENSCILAFLLLILHSSTTKAAFSVGGGVGVGVGVGVGVGNGNGGGDGGSGGVVWVGGGINSPEPPRSSVPNLEGAYTALQAWKSAITEDPLKILSSWVGPNVCAYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNSNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPQELFSKNLDALFLNNNQFEGEIPQNLGSSPASVINLANNKLSGSIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPDRDMQRPPPECSGIPGGSLSCLRIPTPRPLVCGSMAVSKSKHIDPTSPSPP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00050 484 Pfam Leucine rich repeat N-terminal domain 134 168 IPR013210 -
Gma01g00050 484 PRINTS Leucine-rich repeat signature 231 244 - -
Gma01g00050 484 PRINTS Leucine-rich repeat signature 371 384 - -
Gma01g00050 484 Gene3D Ribonuclease Inhibitor 300 424 IPR032675 -
Gma01g00050 484 Gene3D Ribonuclease Inhibitor 133 299 IPR032675 -
Gma01g00050 484 SUPERFAMILY L domain-like 133 417 - -
Gma01g00050 484 PANTHER LRR/EXTENSIN 57 484 - -
Gma01g00050 484 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 57 484 - -
Gma01g00050 484 Pfam Leucine rich repeat 207 264 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00050 Gma-Chr1 578482 580326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00050 128 456 Leucine-rich Repeat extension Gene Families AT3G24480 49.552 8.13e-104 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00050 - - gsj:114407518 900.582