Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00049 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGATTGGCTAGGCTTGCCCGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCGGAGAAACTTCCAGGAGTAACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACGACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACAGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAATTTCGGAAAGAACAGAAAACCTGAGAAAACAAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAGGAAGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAGTGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTGGTAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCTAAGGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAAGTTTCACTCATCATCATCCCTTGGATATTCAACAGCTAAAACCTGATCACTTCAGCTTCATCCCTTTCAGGAaaagctttgatgagGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTAATGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGGCACCTAGCACAAGTAACTCCTCATCATCATCAACTACAACAACATGCTCATCATCATCAAATTTCAAACTCAGCTTTTCATATTAGTAGGCCGTCACATCCCATCTCTACCATTATCTCTCCTCCTCCCCTCCACCACACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAGCAGCAACAACATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATAATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATCACAAATGCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCAGGATCATCATGGGTAG 1347 0.4395 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTSFTHHHPLDIQQLKPDHFSFIPFRKSFDEVGIGEASTAREVMQASGSCEEVHERHLAQVTPHHHQLQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNAQEAEWLKYSSYWPDPDNQDHHG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00049 448 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Gma01g00049 448 MobiDBLite consensus disorder prediction 215 246 - -
Gma01g00049 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 441 IPR044799 GO:0003700
Gma01g00049 448 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Gma01g00049 448 MobiDBLite consensus disorder prediction 215 249 - -
Gma01g00049 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 4 441 - -
Gma01g00049 448 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Gma01g00049 448 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00049 Gma-Chr1 565422 570147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00049 11 445 NAC Transcription Factor Family AT5G56620 54.167 6.97e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma01g00049 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00049 - - gmx:100795246 855.899