Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00044 ATGATGCTCGGAGAACACCATCGCGGGAATCCGACGGTCCTCGTGCCACCGTGGCCAGCCCACGACGATCCGACGGCTGAGATGTACTCCGCGTTCTTAACAAACGACGTCAATGCTGGTGAGTACTCTCCGTACCATCTTCAAGAAGCACTAACGGCGCTGCAGCGTTTTCTGCCGTCAAACGAAACGGACGCAGACTCGGACTCCTCGGAGGCGGCTCAGCCCGACGCGGCGGTGGACGCGTACACGTGCGACCATTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCACGTGGCAGGTCACACGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCCCGCCGCCGTGACCCGCGGAGGTTCCACTACTCTGGCGTGGCGTGCCCGGAGTTCCGCAAGGGAAACTGCAGGAAAGGCGACGCGTGCGAGTTCGCGCACGGCGTTTTCGAGTGCTGGCTCCATCCGGCGCGCTACCGGACTCAGCCATGCAAGGACGGCACGAGCTGCCGGCGGCGCGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTGCGCGTCCTGCCGATGCAGAGTCCGCGTAGCGTGGCAAACTCATCGGAGTCCTACGACGGGTCTCCGATGAGGCAGGTTTCGTTGTCGTCGGCGGCGGCGGCGGCGTTCATGTCTTCTCCGGCGGCTTCTCTCTCTCCGCCAGAGTCGCCGCCATCGGTGAACGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTTGGGAAAATGAAATCGATGCCTCATAATAGAAACGTGTCGGTCGGGTCGCCGAGGGGATCGGTACTCCGACCGGGTTTTTTAAGCCTTCCAACAACGCCAACTCAGCAACCGGTTCGGTCTGGGGTGAAGTGTTTTGATGTTTGGGATGAGAGTTTTGAGGAGGAACCGGTTATGGAGAGGGTGGAGTCAGGGAGGGGAATAAGGGCTAAGATGTTTGAGAAGCTCAGCAAGGAGAATTCACTCGACGCCTCGGCTTCGCCTCCGGATCTTGGGTGGGTCTCGGAGCTTGTTAAcattcctcaacgcaatcaagCTCGTGTGTTAAGACTGGAAACTAGCAACGATGCTGCTGTGGTGTCTGACTTCTTAACCATATCTTGGATATAA 1143 0.5844 MMLGEHHRGNPTVLVPPWPAHDDPTAEMYSAFLTNDVNAGEYSPYHLQEALTALQRFLPSNETDADSDSSEAAQPDAAVDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRRFHYSGVACPEFRKGNCRKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPMQSPRSVANSSESYDGSPMRQVSLSSAAAAAFMSSPAASLSPPESPPSVNEMVASLRNLQLGKMKSMPHNRNVSVGSPRGSVLRPGFLSLPTTPTQQPVRSGVKCFDVWDESFEEEPVMERVESGRGIRAKMFEKLSKENSLDASASPPDLGWVSELVNIPQRNQARVLRLETSNDAAVVSDFLTISWI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00044 380 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
Gma01g00044 380 Gene3D - 122 196 - -
Gma01g00044 380 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 350 - -
Gma01g00044 380 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Gma01g00044 380 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Gma01g00044 380 PANTHER UNKEMPT FAMILY MEMBER 7 350 IPR045234 -
Gma01g00044 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 151 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00044 Gma-Chr1 488215 489790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00044 75 264 C2H2 Transcription Factor Family AT5G12850 47.170 1.33e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma01g00044 zf-CCCH 7.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00044 - - gmx:100809761 692.96