Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00042 ATGCCAAGTTCGATCGGGTGCATACTGTTGCTGACACTTTGTGACCTTGTCCTCGTAGCTTTAGTTCATGCACAGCAACAAATAGgcttcataagcattgattgcgggggtactccaaccaataatgagtacacagatgaaataactaacataaggtacaccactgatggagcctatatacaaactggggttaataagaacatttcctccgagtatgcataccctaagaatcctaatctgccacttctactctcagatctcagaagctttcctctgggagaaaggaactgttataggttagtagctggaaaaagaggcgagttacatttgataagggcttccttcttgtatggaaactatgatggagaaaacaagccaccagagtttgatctctatgttgatgtcaatttttggtcaacagtcaaatttagaaatgcctcagaagaagttactatggaaataatcagtgtggcacaatcaggtgccacacatgtttgccttgtgaacaagggagcaggaactccttttatctcaggcttggaacttagaccacttaatagttctatttatgacactgagtttggagaatcTGCTTCACTGTCACTTTTCAAACGATGGGACATTGGGTCTACCAATGGAAGTGGTAGATATGAGGATGATATTTATGATAGAATCTGGTCCCCCTTCAATTCCTCATCCTGGGAATCTGTCAACACTTCCACCCCAATAAATGTCAATGATGATGGCTATAGACCCCCATTTAAAgtcattagaactgctgctagaccaaggaatggcagtgatactttggaattttcttggacccctgatgatccgagttggaaattttatgtctacttgtactttgctgaagtggaacagcttgagaaaacccaactgaggaaattcaatatatcttggaatggatctccattgtttgatgattccctaataccgcgccacttgtttgcaaccactctttctaattcaaaatccttggtagcaaatgaacataagatttctatccacaaaacaaaagattcaactcttccacccattcttaatgcggttgagatttatgtagcaagacagctagatgcccttgcaacatttgaagaagatgttgatgctattctgtccataaaggaaaactatagaattcaaagaaattgggtgggtgatccatgtgagccaaagaactactcttgggaaggtttaaaatgcaactatagcacctcacttcctccccgaattatatctctGAATATGAGCTCAAGCAGTTTGAGTGGAATAATAACTTCTGCCATTTCCAATCTCTCCTCGTTGGAATCTTTGGACTTACATAACAATAGCTTAACTGGAGCAATGCCTCAGTTTTTGGAAGAATTGATATCCCTTAAATATTTGGATTTAAAGGGCAATCAATTTTCAGGATCTGTTCCTACCATTCTTTTAGAAAGATCAAGGGCTGGATTACTCACATTGAGGGTGGATGATCAAAATCTCGGGGACACAGGAGGGAACAATAAAACCAAGAAAATTGTTATTCCCGTAGTGGTATCAGTATCAGTTTTAGTTATATTGATTGCTTTCACTCTCTTTTGGAAACTTAGAAGAAATGAACGATCAGACGAGGAGATTAGTATGCTCAACAAAGGAGGAAAAACCGTAACAACGaagaactggcaatacacatattcagaggtgttggacatcaccaaaaactttgaaatggcaattggtaagggaggatttggaactgtgtactgtggggagatgaaagatggcaaacaagttgcagtcaagatgctttctccatcatcatctcaagggccaaaggaatttcggactgaggctgagcttttgatgacagttcatcacaaaaatttggtatccttcgttggctactgtgatgatgataacaagatggcactcatttacgagtacatggccaatggcagcctgaaagaTTTTCTCTTGCTCTCAGATGGAAATTCACATTGCTTGAGTTGGGAAAGGAGAATACAGATAGCAATCGATGCTGCAGAGGggttggattacctacaccatggatgcaagccaccaataatacacagggatgtaaagtcagccaacattcttttaagtcaagactttgaagctaagatagcagattttggcctctccaGGGAGTTTAGGAAAGATAACCAAGATCAACAATTTCAAGTGATTCACAAAGATGCTACATATGAAAAATCTGCAGTAATGGGCACAACAGGGTACCTTGATCCAGAgtactacaaattagggagactgaatgagaaaagtgacatctatagttttggaattgttctactggaattactcacagTGAATCTATCACCTCTCCTTTTCCAAGATAGTGCAAACGGTCTTGAAATGCTGGAGAAAAAAGATTATGTGTTTGATAAACAAAAATGGGGAAGAGGAAAATCCAAAGAATTGGCTAGGGGAAATAACAAAAGGGCTAGGAAAATTGATGCTGTTGACAAGACGTTGGATGAGATCAATGAACAGATTGAGAACATGAGAATGATTCAGGAAGCCTTGTCAGCTCCAATTGGTGAAGCTGCTTATTTTGATGAGGATGAATTGGAAGCAGAACTAGAAGAACTGGAGGCTGCTGAGTTTCATCCAGCAACTACAGCTCCTGCAGCCACATTGCTGGTCCCGGCCCGGCGACCACCTACTCGCCCTGTTCCTGTGGAAGATGAATTGGCAGCTTTGCAGGCTGAGTTGGCAATTTGA 2766 0.1909 MPSSIGCILLLTLCDLVLVALVHAQQQIGFISIDCGGTPTNNEYTDEITNIRYTTDGAYIQTGVNKNISSEYAYPKNPNLPLLLSDLRSFPLGERNCYRLVAGKRGELHLIRASFLYGNYDGENKPPEFDLYVDVNFWSTVKFRNASEEVTMEIISVAQSGATHVCLVNKGAGTPFISGLELRPLNSSIYDTEFGESASLSLFKRWDIGSTNGSGRYEDDIYDRIWSPFNSSSWESVNTSTPINVNDDGYRPPFKVIRTAARPRNGSDTLEFSWTPDDPSWKFYVYLYFAEVEQLEKTQLRKFNISWNGSPLFDDSLIPRHLFATTLSNSKSLVANEHKISIHKTKDSTLPPILNAVEIYVARQLDALATFEEDVDAILSIKENYRIQRNWVGDPCEPKNYSWEGLKCNYSTSLPPRIISLNMSSSSLSGIITSAISNLSSLESLDLHNNSLTGAMPQFLEELISLKYLDLKGNQFSGSVPTILLERSRAGLLTLRVDDQNLGDTGGNNKTKKIVIPVVVSVSVLVILIAFTLFWKLRRNERSDEEISMLNKGGKTVTTKNWQYTYSEVLDITKNFEMAIGKGGFGTVYCGEMKDGKQVAVKMLSPSSSQGPKEFRTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEYMANGSLKDFLLLSDGNSHCLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDFEAKIADFGLSREFRKDNQDQQFQVIHKDATYEKSAVMGTTGYLDPEYYKLGRLNEKSDIYSFGIVLLELLTVNLSPLLFQDSANGLEMLEKKDYVFDKQKWGRGKSKELARGNNKRARKIDAVDKTLDEINEQIENMRMIQEALSAPIGEAAYFDEDELEAELEELEAAEFHPATTAPAATLLVPARRPPTRPVPVEDELAALQAELAI 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00042 921 Gene3D Phosphorylase Kinase; domain 1 580 650 - -
Gma01g00042 921 Gene3D Ribonuclease Inhibitor 366 489 IPR032675 -
Gma01g00042 921 Coils Coil 832 852 - -
Gma01g00042 921 Pfam Leucine rich repeat 420 476 IPR001611 GO:0005515
Gma01g00042 921 Pfam Snf7 831 884 IPR005024 GO:0007034
Gma01g00042 921 SUPERFAMILY L domain-like 390 485 - -
Gma01g00042 921 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Gma01g00042 921 Gene3D Transferase(Phosphotransferase) domain 1 651 857 - -
Gma01g00042 921 Pfam Protein tyrosine and serine/threonine kinase 577 804 IPR001245 GO:0004672|GO:0006468
Gma01g00042 921 PANTHER OS07G0107800 PROTEIN-RELATED 10 787 - -
Gma01g00042 921 Pfam Malectin-like domain 33 360 IPR024788 -
Gma01g00042 921 SUPERFAMILY Protein kinase-like (PK-like) 560 810 IPR011009 -
Gma01g00042 921 PANTHER BNAC07G41790D PROTEIN 10 787 - -
Gma01g00042 921 SMART serkin_6 574 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00042 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Gma01g00042 921 ProSiteProfiles Protein kinase domain profile. 574 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00042 Gma-Chr1 470653 478895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00042 8 783 Receptor kinase-like Gene Family AT4G29180 52.785 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gma01g00042 Malectin_like 2.1e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00042 - - gmx:100793137 1544.25