Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00017 ATGAAGAAGAAGAGCAGCATAAAGGCGGAGCTGTGGCACGCTTGTGCGGGGCCTTTGGTTAAGCTTCCTCCCTCCGGCACGCACGTCATCTACTTCCCTCAAGGTCACAGCGAACAAGTCTCTGCTTCTCTCAACAGAGATGTCCACTCTCAAATCCCCAACTATCCCAATCTCCCCTCCAAGCTACTCTGTCTCCTCTACTCTCTCACTTTGCATGCTGATCCCCAAACTGATCAAGTCTACGCTCAGATTACTCTTCAACCCCTCCCTTCTTTTGACAAGGATGCTCTCTTGAGATCTGATCTCGCTCTCGAATCCACCAAGCCACCACCTGACTTCTTCTGCAAACATCTTACCGCCAGTGATACTAGCACTCACGGTGGTTTCTCCGTCCCTCGCCGTGCCGCCGAGAAGATTTTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTCGTCGCCAGGGATTTGCACGACACCGTTTGGACATTCCGCCACATATACCGTGgacaaccaaaacggcatttgcttaccactggatggagtctgtttgttagtggaaagaGGCTTTTTGCCGGAGACTCTGTTTTGTTCATTAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCTGCAAATAATAGCCCCTTCACCGTCTTTTACAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCAGTGTACAGCCACCAGCCATCACTTGGCATGCGTTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGCATATGGGTACAGTTACAGGTATCAGTGATCTGGATCCTGTGCAATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACCGCTGGGGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCAGTGACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTTAGATCCAAGAGACCAAGACAACCTGGAATGCCTGATGATGAATTGTCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCCTGGTGATGATATGTGCGTGAAGGATCCCCAAGGTCTCCCTGGCTTGAACTTAGCTCAATGGATGAACATGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTATGCACCTTCCTTATCGGGTTCTATTTTGCAAAATATTCCTGGACCTGATATTTCTCACCAGCTGGGATTTTCTGCTCCACAAATTTCTCAGTCAAACAATGTAGCCTTAAATACTCAGAGGCTTCTTCAGACCGCTCCACAACTGGATCACCTTCAGAAGCTACCATCTACTTCTAGCACATTGGGAACAGTCCTGCCGCCGCAGCAACAGTTGGGTGATATCACTCAACAACCGAGGCAGAACTTGGCAAATCAAACAATCCCTCAGGGTCAAGTTCAGGCCCAACTCGTGCATCCCCAGAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCAGTCAAAACCATCAACTACATAGAAGCCTCTCTCAGAACCCATCACAGCAGCAGCAGCAGACAATTATTGGTCAGAATCAACACCAAAATTTGATACAGTCTCCTATGCCTGATCATGTTCAACAATTACAGATGTCTGACGATCAGATTCAGCTGCAGTTGTTACAGAAGCTTCAACAACAAAAACAAACACTCTTGGCCCAACAAACTGCATTGCAGCATTCTACTCAACTTACTCAAATCCAGGATCGGCAAAGACAGCTTTTAGATAAAACGCATAACTTGTCTAGAGCACTAACACCTGGTCAAGTACGGGAAATTCCTCCTATTTTTCAGAATTCACTCCCCAAGGCTAATTCTATCTCAAATCCGATTACAAAGGCCAATTGCCAGAGCAATATTCAATTCTCTCAGCAGCCCAGGCTTCAACAGCAGCAACCTGGCTTGCTTTCTGAAATGCCTGGCCATATGGCACTTCACCCTACCACTACAACCAACCAACTTTCTGCTGCTGGCAGTAGTATACTGACTGGAGCAGGTGGTGCAGGGCAGTCTGTAATTACTGATGAAGTTCTATCTTGCTCCACCTCACCTTCTGCAAATAACTGTACCAATGCACTTCCACAATTGATAAATTCACGATTCCAGAGAAGCACACTGGTAGGCGATGACATGGCCCAGTCTGCTGCCACAATCTTGAATTCAAGTGCCTTAGAAACCACGTCATCAAATGCAAACATGTTGAAAGATTTACAGCCAAAGTCTGAAGTTAAGCCATCTCTGAATATTTCCAAAATTCAGAATCAAGGGCATTTTGCTCCTCAGACATACTTGAATGGTAATGCTGCCCATACAGATTGTTTGGACACATCATCTTCTACAACTTCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAACAATCCATTATCTTACAATCCACAGTCTTTGTTGTTTAGAGACAATAATCAAGATGGGGAAGTTCAGGCAGATGCTAGGAGCAATATTCCTTATGCCAATAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCACTCTCAACCAAAGGCACATTGAGGTTGGGGAAGGATTTGTCTAATAATTTCTCTTCAGAAGGCATGCTTGGTAATTATGAAATTAACAGAGATGCCCAGCAGGAACCTTCGTCTTCAATGGTTTCACAGACATTTGGTGTACCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAACTTCTTGAATAGTGGTCCATGGGCTCCACCACCAGCACCGCCACTGCCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGATCCATAGACATAACACGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTAGCTCGTAGGTTTGGCATAGAGGGACAGCTGGAGGATCGGCAAAGGATAGGTTGGAAACTTGTCTATGTGGATCATGAGAGTGATGTTCTACTATTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTTCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGACGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTAA 3297 0.4465 MKKKSSIKAELWHACAGPLVKLPPSGTHVIYFPQGHSEQVSASLNRDVHSQIPNYPNLPSKLLCLLYSLTLHADPQTDQVYAQITLQPLPSFDKDALLRSDLALESTKPPPDFFCKHLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRHMGTVTGISDLDPVQWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELSDFDNIFKRTMPWPGDDMCVKDPQGLPGLNLAQWMNMQQNPALASSLQPNYAPSLSGSILQNIPGPDISHQLGFSAPQISQSNNVALNTQRLLQTAPQLDHLQKLPSTSSTLGTVLPPQQQLGDITQQPRQNLANQTIPQGQVQAQLVHPQNIVQTNNILQQQQPSSQNHQLHRSLSQNPSQQQQQTIIGQNQHQNLIQSPMPDHVQQLQMSDDQIQLQLLQKLQQQKQTLLAQQTALQHSTQLTQIQDRQRQLLDKTHNLSRALTPGQVREIPPIFQNSLPKANSISNPITKANCQSNIQFSQQPRLQQQQPGLLSEMPGHMALHPTTTTNQLSAAGSSILTGAGGAGQSVITDEVLSCSTSPSANNCTNALPQLINSRFQRSTLVGDDMAQSAATILNSSALETTSSNANMLKDLQPKSEVKPSLNISKIQNQGHFAPQTYLNGNAAHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLSYNPQSLLFRDNNQDGEVQADARSNIPYANNIDSQMGMPLNPDSLSTKGTLRLGKDLSNNFSSEGMLGNYEINRDAQQEPSSSMVSQTFGVPDMAFNSIDSTIDDSNFLNSGPWAPPPAPPLPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLLGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00017 1098 SUPERFAMILY CAD & PB1 domains 999 1064 - -
Gma01g00017 1098 PANTHER AUXIN RESPONSE FACTOR 3 1092 - -
Gma01g00017 1098 ProSiteProfiles PB1 domain profile. 986 1070 IPR000270 GO:0005515
Gma01g00017 1098 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 1092 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma01g00017 1098 CDD B3_DNA 113 205 IPR003340 GO:0003677
Gma01g00017 1098 Gene3D - 981 1075 - -
Gma01g00017 1098 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Gma01g00017 1098 Gene3D - 112 215 IPR015300 -
Gma01g00017 1098 SUPERFAMILY DNA-binding pseudobarrel domain 103 243 IPR015300 -
Gma01g00017 1098 SMART B3_2 114 216 IPR003340 GO:0003677
Gma01g00017 1098 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Gma01g00017 1098 Coils Coil 594 614 - -
Gma01g00017 1098 Pfam AUX/IAA family 985 1071 IPR033389 -
Gma01g00017 1098 Gene3D - 278 349 - -
Gma01g00017 1098 MobiDBLite consensus disorder prediction 535 563 - -
Gma01g00017 1098 Pfam Auxin response factor 240 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00017 Gma-Chr1 314728 320039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00017 3 457 B3 DNA Binding Superfamily AT1G19220 71.397 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma01g00017 B3 1.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00017 - - gmx:100817780 2012.65