Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi2000119g0001 ATGATCTTCATGGACGAGATAGACTGCGGCAGCTTCTTCGACAACATCGACGACCTCCTTGATTTCCCCGCCGAAGACGTCGAAGGTGCCGCCTTGCCGGCATCAACCGGGACCTGCCACTCGTTTCCGAGCATTTGGCCCGTCGAATCCGAGTCATTACCCGGCTCCGACCCGGTTTTCATCGGGAACAGCGCGGCAGACCTCTCCGTTCCGTATGAAGACGTTGTCCAGTTAGAATGGCTGCCAAACTTTGTGGAGGACTCCTCTTGTGGGAGCCTCACCTTGAAGAAAGTGGAGCCACCCTGCACCAACAATGACCCGGCGCATAACCAATTCCAGACATCCAGCCCGGTTTCTGTCCTCGAAAACAGCAGCTCCAGCTCTGGGGAGAAGACTGCGCCTCGCAGCCCAGAAATTTATGTTCCTATACCATGCGTCCGTGCACGTAGCAAGCGTCCTCGCCCTGCGAGCTTCAACCCTGGTCCTGTGATGCAACTTATCCACCCTCCTTTTGTTGGCGAAAAGACCCAGCCTAATGTTGTGTCAAAGGCCTCTTCAAATTCTGAGAATTTCAGAGAGTCTCATCCTGTAATCAAGATACCAAAGCAAATTTCTGGAGAGCATAAGAAGAATAAGAGAATCAAACAGTCTTTTCCATTAGGTCCAGCGGATGTGAACCGGAATGTGCCATCACAAGCAGTTAGGAAATGCATGCATTGTGAGATAACTAAGACACCACAGTGGAGGGCTGGGCCATTGGGGCCGAAAACCCTTTGCAATGCATGTGGTGTTCGCTACAAGTCAGGCCGGCTCTACCCCGAATACCGTCCTGCCGCAAGTCCAACCTTTTGCCCATCTTTGCACTCTAATTCCCATCAGAAGGTTCTTGAAATGAGAAGCAAGGCCGGCAAAACAGCTGCTTCTATGGCAACCTATTCAGCTGCCTCTCCAGAACTCATTCCGAACACAAACAGCAGCCTTACCCTGGAATACATATGA 999 0.5175 MIFMDEIDCGSFFDNIDDLLDFPAEDVEGAALPASTGTCHSFPSIWPVESESLPGSDPVFIGNSAADLSVPYEDVVQLEWLPNFVEDSSCGSLTLKKVEPPCTNNDPAHNQFQTSSPVSVLENSSSSSGEKTAPRSPEIYVPIPCVRARSKRPRPASFNPGPVMQLIHPPFVGEKTQPNVVSKASSNSENFRESHPVIKIPKQISGEHKKNKRIKQSFPLGPADVNRNVPSQAVRKCMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGRLYPEYRPAASPTFCPSLHSNSHQKVLEMRSKAGKTAASMATYSAASPELIPNTNSSLTLEYI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi2000119g0001 332 MobiDBLite consensus disorder prediction 104 133 - -
Glsi2000119g0001 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 294 - -
Glsi2000119g0001 332 PANTHER GATA TRANSCRIPTION FACTOR 15 307 - -
Glsi2000119g0001 332 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Glsi2000119g0001 332 FunFam GATA transcription factor 227 314 - -
Glsi2000119g0001 332 MobiDBLite consensus disorder prediction 101 136 - -
Glsi2000119g0001 332 PIRSF Txn_fac_GATA_plant 2 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi2000119g0001 332 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Glsi2000119g0001 332 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Glsi2000119g0001 332 Gene3D - 231 281 IPR013088 GO:0006355|GO:0008270
Glsi2000119g0001 332 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Glsi2000119g0001 332 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi2000119g0001 16 301 C2C2-Gata Transcription Factor Family AT4G32890 36.275 5.43e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi2000119g0001 GATA 6.5e-15 CL0167