Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi2000078g0090 ATGGAATTCTCTGTAAGAGCTGCGGAACTAACAAGTCTATTAGAAAATAAAATTAGCAACTTTGTCACTAGTTTTCAATTGGATGAGATCGGTCGAGTGGTGTCCGTTGGAGATGGTATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTCAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTGGGAATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGGGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGGGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAACCAAAAGCAATTGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTCGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGGGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCCCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTCAAAACTTGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCAAATGCCATTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAAACCGGAATTACTACAATCCCTGAAAGGTGGCTTAACTAACGAAAGAAAGATAGAACCAGATACATTCTTAAAAGACTTGAAAGAGAAAATATGA 1521 0.4444 MEFSVRAAELTSLLENKISNFVTSFQLDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQLNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDQMPLDRISQYERAIPSSIKPELLQSLKGGLTNERKIEPDTFLKDLKEKI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi2000078g0090 506 FunFam ATP synthase subunit alpha 383 506 - -
Glsi2000078g0090 506 FunFam ATP synthase subunit alpha 3 95 - -
Glsi2000078g0090 506 Pfam ATP synthase alpha/beta chain, C terminal domain 382 479 IPR000793 GO:0015986
Glsi2000078g0090 506 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Glsi2000078g0090 506 Gene3D - 96 382 IPR027417 -
Glsi2000078g0090 506 NCBIfam F0F1 ATP synthase subunit alpha 5 484 IPR005294 GO:0015986|GO:0045261|GO:0046933
Glsi2000078g0090 506 FunFam ATP synthase subunit alpha, mitochondrial 96 382 - -
Glsi2000078g0090 506 PIRSF F_ATPase_subunit_alpha 3 506 IPR005294 GO:0015986|GO:0045261|GO:0046933
Glsi2000078g0090 506 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 94 IPR004100 GO:0046034|GO:1902600
Glsi2000078g0090 506 CDD ATP-synt_F1_alpha_N 29 94 - -
Glsi2000078g0090 506 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 375 IPR000194 GO:0005524
Glsi2000078g0090 506 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Glsi2000078g0090 506 CDD ATP-synt_F1_alpha_C 386 506 IPR000793 GO:0015986
Glsi2000078g0090 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 381 IPR027417 -
Glsi2000078g0090 506 Hamap ATP synthase subunit alpha [atpA]. 3 503 IPR005294 GO:0015986|GO:0045261|GO:0046933
Glsi2000078g0090 506 Gene3D - 4 95 IPR023366 -
Glsi2000078g0090 506 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 384 483 - -
Glsi2000078g0090 506 CDD F1-ATPase_alpha_CD 96 378 IPR033732 GO:0032559
Glsi2000078g0090 506 Gene3D - 383 506 IPR038376 -
Glsi2000078g0090 506 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 504 IPR005294 GO:0015986|GO:0045261|GO:0046933
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi2000078g0090 62 381 Primary Pumps ATPases(2) AT4G38510 26.444 2.38e-24 104