Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1999 ATGGCAACACCAGCCAGTGATAACAATATTCTGAGACTAAACCATCTTGACATCCATGGTGATGATGCTGGATCCCAGGGAGCAGTTGTTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACCACTTACAATGAGGTAGCAGATGAACTTGTAGCTGAATTTGCTGGGCCAAGTAGTAGTGTTTCATCTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCCATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCATACTAGTCTGAACGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCTTAGGAATAGGATTGAAAAGAAAGCTGCCTACCTGCAAGAGTTGGAAGAGCAATACATAGGTCTTCAGAACCTCATACATCGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGTGTAGCTTTACCTTTTATTCTAGTACAGACTCGCCCCCATGCGACTGTTGAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACGCCTTTTGAGTTGCATGATGACAACTATGTCCTTAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATACGACGCACAATCTTACAGATGGAGGTGAAGGTTCTAGCATTTCAGGCTATTGTCAGGCGCAGGTTACTCCTTCAGTTTCAAACCAACCAGTTAGAACTCCCACCTCACCACCTCTCCCTCGAATATTGAAGGCAAGAGTTAAGCATGAGCATTAA 894 0.4284 MATPASDNNILRLNHLDIHGDDAGSQGAVVSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFAGPSSSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPHTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQNLIHRNEQLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNTTHNLTDGGEGSSISGYCQAQVTPSVSNQPVRTPTSPPLPRILKARVKHEH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1999 297 FunFam Transcription factor-like protein DPB 40 133 - -
Glsi14g1999 297 Coils Coil 144 178 - -
Glsi14g1999 297 SMART DP_2 135 295 IPR014889 -
Glsi14g1999 297 PIRSF Txn_factor_DP 1 297 IPR015648 GO:0005667|GO:0051726
Glsi14g1999 297 CDD DP_DD 133 236 IPR014889 -
Glsi14g1999 297 MobiDBLite consensus disorder prediction 19 48 - -
Glsi14g1999 297 Gene3D - 40 133 IPR036388 -
Glsi14g1999 297 Pfam E2F/DP family winged-helix DNA-binding domain 48 128 IPR003316 GO:0005667|GO:0006355
Glsi14g1999 297 Pfam Transcription factor DP 136 249 IPR014889 -
Glsi14g1999 297 SUPERFAMILY E2F-DP heterodimerization region 134 249 IPR037241 -
Glsi14g1999 297 FunFam Transcription factor-like protein DPB 134 258 - -
Glsi14g1999 297 PANTHER TRANSCRIPTION FACTOR DP 3 251 IPR015648 GO:0005667|GO:0051726
Glsi14g1999 297 SMART E2F_TDP_2 45 128 IPR003316 GO:0005667|GO:0006355
Glsi14g1999 297 Gene3D Transcription factor DP 134 269 IPR038168 -
Glsi14g1999 297 MobiDBLite consensus disorder prediction 243 262 - -
Glsi14g1999 297 SUPERFAMILY "Winged helix" DNA-binding domain 48 129 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1999 Glsi-ChrGlsi14 29494046 29512823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1999 46 246 E2F-DP Transcription Factor Family AT5G02470 55.446 6.31e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi14g1999 DP 6.5e-42 No_clan