Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1983 ATGATGGGGAGAACACCATGCTGTGATGAAAATACTGGTTTGAAGAAGGGACCTTGGACCCCAGAAGAGGATAGAAAACTGGTAGATTACATTGAGAAACACGGACATGGGAGTTGGAGAGCACTTCCGAAGCTAGCTGGATTAAATAGATGTGGAAAGAGTTGCAGGTTAAGGTGGACTAACTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGAAGAAGAAGAGCAAGTTATCATCAATTTGCATGCAGTCCTTGGCAATAAGTGGTCGGCTATAGCGGGTCATCTGCCAGGGAGAACAGACAATGAAATCAAGAATTTCTGGAACACACATTTGAAGAAAAAGCTTCTGCAAATGGGTTTAGACCCAGTGACCCACCGTCCTAGATCAGATCATCTTAATCTTCTATCCAACCTGCAACAGTTGCTAGCTGCTGCAAACATTGGCAGCAGTTTCACAAACCCTTGGGACATTAATAATGCTCAAACATTGCATCCTGCAGATGCCACCCAACTAGCCAAACTCCAATTGCTTCAGAACATACTTCAAGTCCTCAGTGCCAGTCCTGCCTCAAACTTAGAAGCACTGATCAATCCCTTTGGGTCATCATCCTCATCACCACCAGACCATCTTATATATGAACTATTTGGCCTAAGCCATTCTAAGCTCCAAGGTCTTTATAACGGTTCAACTAGTTTTCCTTCTCTAAATCAGCTCAACTTGTCAAACTTTGAAGCTCTTCAGCAGCTACCCCAAACAAGTGAGTTTCAGAATATAAGTGGCGGCAATAGCAGCTGCCGAGACAGAGAGTCTAAGAAAAATGAACAGCTTCATAAGATTGCATATTCTCCTCCGGCATCATCAAGTTCGTTTCCAAATCTAGTTTCAACCTCACCTGAATGCTCCCCAATTAAGAAAATGAAAAACAAGGTAAACCAAAATGAGTGCTCTAATCCTTCTTCCAATTCAACAACCTTTGAAATGTGGGGAGATTTCATGGATGAAGAAGCAAGCGATGCTTATTGGAAAGATCTCATAGAGTTATCAATCACCTTTTCCCAATAA 1071 0.4202 MMGRTPCCDENTGLKKGPWTPEEDRKLVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIRRGKFSEEEEQVIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAAANIGSSFTNPWDINNAQTLHPADATQLAKLQLLQNILQVLSASPASNLEALINPFGSSSSSPPDHLIYELFGLSHSKLQGLYNGSTSFPSLNQLNLSNFEALQQLPQTSEFQNISGGNSSCRDRESKKNEQLHKIAYSPPASSSSFPNLVSTSPECSPIKKMKNKVNQNECSNPSSNSTTFEMWGDFMDEEASDAYWKDLIELSITFSQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1983 356 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Glsi14g1983 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 302 - -
Glsi14g1983 356 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Glsi14g1983 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Glsi14g1983 356 SMART sant 68 116 IPR001005 -
Glsi14g1983 356 SMART sant 15 65 IPR001005 -
Glsi14g1983 356 Gene3D - 13 69 - -
Glsi14g1983 356 FunFam Transcription factor MYB39 71 132 - -
Glsi14g1983 356 CDD SANT 71 114 IPR001005 -
Glsi14g1983 356 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Glsi14g1983 356 CDD SANT 18 63 IPR001005 -
Glsi14g1983 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Glsi14g1983 356 Gene3D - 71 118 - -
Glsi14g1983 356 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Glsi14g1983 356 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Glsi14g1983 356 FunFam MYB-related transcription factor 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1983 Glsi-ChrGlsi14 24178158 24180010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1983 2 349 MYB Transcription Factor Family AT5G16770 51.944 1.17e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g1983 Myb_DNA-binding 6.9e-17 CL0123