Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1960 ATGTACCCAAAAAGGTCTAGCCAAGGCAATGGCCCTGTTTCCAAACCAGTGCGCACAAGTGATAGGATCAAGACAAGGCCTAACATGTATGGTCGACCATACTTGTATTACAACTCAAATCTTAGGCGCACACAGCGCACCAGGAAAAGCAAGAACAAGACAAGGACAGCAGCTTCACAGATTGCCAAGATATTGTGCCCAGGGAATAGGCCAGCACAAGATTCAAATGCTGATTCTCCCTCTACCAACCTTCGTCGTTCAACTAGGAAGAGAAGGATGTCAGTAAATCTTGAAGGTTTCACTGACAGTTCTGGAGGTGAGGATGAAGACTTAATGAGGCCCACATATCAATCACTGAGAAACCAGATTGACCATAATCTGATTCAGGATGAGTTGATGCCCCACAAGCGCAAAAGAGCTGTGGAAACTAAACCAATGCCTCGACGTGAAGGTCTGCGACCACGTGGTTCAAAGGCTTCTGTAAGAGAGCGAATAAATTTAGAATCAGATGATGAGCAAGATATTTCAGAAGAGAAGTTTGGTGAAGATGAAACAGAAAATGGGAATGATGTTGAGGAAAAGGATGCAGATGATGGTCAGAATGAGATTGAAGGCGATGCTGAGGGTGAAGATGAAGGTGAGGGTGAAGATGAAGGAGATGAAGAAGGTGATGATGAAGAAGGTGAAGAGCATGATGGAAGAAGGCGTTATGATCTTCGAAATCGTGCAGATGTTCGCAGATTCTCTATGGAGGAAGGGAAAGCCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGCCCTAAGGTCAGCAGGGATGTTAGGAAGGGCGGATCAAGAGTTCATAAGCGTCATCGTGTAGCAAGACCTGAAGATTCTGATGACTCCCTGCTTGTGGATGAGCTGGATCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTTGGGGGATTAGACATGCATGGAACAACTGCATGGGGGTTGAATCTTGCTGCATCAGGTTGGAGTCATCAGGGTGATGCTTTATCTACCTTGACATCTGGGATTCAAACTGCCGGACCAAGCTCTAAGGGAGGTGCTGATATTCAACCCTTACAGGTTGATGACAATGTTAGTTTTGATGATATTGGTGGGCTCTCTGAATACGTTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTACTGTACCCAGATTTCTTTGCAAGTTATCACATTACTCCACCTAGAGGGGTTTTGTTATGTGGGCCCCCTGGAACTGGCAAAACATTAATTGCAAGAGCTTTAGCTTGTGCAGCTTCAAAAGCTGGCCAGAAGGTTAGTTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAATTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATTTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAGATTCACAATTCTATTGTGTCCACTCTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATAGGAGCCACCAACAGGATTGATGCTATTGATGGAGCCTTGCGGCGCCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGCAAGTGGAAGCATCCTCCGTCAAAGGAATTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGATATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACCAGTGATGACAAATTTTTAATAGATGTTGATTCAGTCAAGGTTGAAAAGTATCATTTTATTGAAGCAATGTCAACAATAACTCCTGCTGCTCATAGGGGTGCAATTGTGCACTCTAGGCCATTGTCTCTGGTAGTTCAACCATGTCTACAAAGACATCTAGAGAAAGCCATGAGTATTATATCTGATATTTTTCCACCAGTTGCTGTTGCATCAGAATTGGCCAAACTTTCTATGCTTTCTTATGGTTCTGCTATTCCACTGGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACTGGACTGGACCATCTTGGGCCTGCGGTTTTACACGAACTGGAAAAATTTCCTGTTCATTCATTAGGACTTCCATCTCTCCTGTCAGATCCAAGTGCAAAGACACCAGAGGAGGCTTTAGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCGATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCACATGAACAGCTTCGGGCTGTTCTCCTGACTTTGCTAGAAGAATTGCCTTCTGACTTACCTATATTATTACTCGGAACATCCTCAGTCCCACTTGATGAAGTTGATGAAGTGCCTCCCTCGGTGTTCCCTCATCTTTCAGTCTATCGCATAAACAAACCATCTACTGAAGATAGAACTCCATTTTTCAATTGTTCCATAGAAGCTGCTTTGTCGGCCTTGCTGGAGGGAATAAGCAAAAAAGCGCCAGATACAGGTTCCCTTCCTGAACTTCCCAAGGCACCAAAATTGGCTAGTGGTCCAAAGGTATCTGAGCTAAAAGCAAAGGTTGAAGCTGAGCAGCATGCCCTTCGCAGATTGCGAATGTGCCTCAGAGATGTTTGCAACCGGATATTATATGACAAACGATTTAATGCTTTCCATTATCCAGTCTCAGATGAAGACGCACCTAATTATCGCTCAATTATCCAGAACCCAATGGACATGGCTACCATACTGCAGCATGTTGATAATGGCCACTATATTACATGTTCGGCATTCTTACAGGATATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGACGACTACAATGGCTCTAGGATTGTTAGTAGAGCGTGTGAACTCCGTGATGCGGTGTACGGGATGCTCTCACAGATGGATCCCGCACTGGTTGCATACTGTGACAAGATTGCTGCCCAAGGTGGCCCAGTTCATTTGCCTGATGAATTTGGGGGTTCTACATTCCCACATACTCCTGTTGTACAGCTGGGAACCACCACTAGAATGAGTGCTCGACTTCGTAATGTGCAACCAGAGGTTAATATGGATCAAAGCTATGAAGTATTGAAGCGGATGAAAAAGAGCACCGATGTTGCACATGCAGAAGACAAGCCACAACAAGATCATGTACTGTCAAAGTCTTCCCACGAACATCAGGCCAATGACTTAGCTTGTGAAAGGCTGGAACCGGCTTCAACTGATGGAAATCTACATAGTAGTACTTGTACAAGTGGACATGCTGATGGTAGCAGCCCTGAAGATGTCACAATGTTAGATGGTGAGTTTTCTAGCCAAGTGGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATCCCGCAGCTTGAAAGGCTTTACACAAGAATGATGAAGGGCGTTTTTGAAATCAAAGATAAAGGAATGAAAGGTCTGAAGGCTTCGGTTTTGAGGTTTTTGTTGAAATTTGTAGAGGAGGATGCAAATTTCTGA 3618 0.442 MYPKRSSQGNGPVSKPVRTSDRIKTRPNMYGRPYLYYNSNLRRTQRTRKSKNKTRTAASQIAKILCPGNRPAQDSNADSPSTNLRRSTRKRRMSVNLEGFTDSSGGEDEDLMRPTYQSLRNQIDHNLIQDELMPHKRKRAVETKPMPRREGLRPRGSKASVRERINLESDDEQDISEEKFGEDETENGNDVEEKDADDGQNEIEGDAEGEDEGEGEDEGDEEGDDEEGEEHDGRRRYDLRNRADVRRFSMEEGKARPRSPRRVLHQGMGPKVSRDVRKGGSRVHKRHRVARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAWGLNLAASGWSHQGDALSTLTSGIQTAGPSSKGGADIQPLQVDDNVSFDDIGGLSEYVDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPSKELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPVAVASELAKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVPLDEVDEVPPSVFPHLSVYRINKPSTEDRTPFFNCSIEAALSALLEGISKKAPDTGSLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATILQHVDNGHYITCSAFLQDIDLIVSNAKAYNGDDYNGSRIVSRACELRDAVYGMLSQMDPALVAYCDKIAAQGGPVHLPDEFGGSTFPHTPVVQLGTTTRMSARLRNVQPEVNMDQSYEVLKRMKKSTDVAHAEDKPQQDHVLSKSSHEHQANDLACERLEPASTDGNLHSSTCTSGHADGSSPEDVTMLDGEFSSQVESVKQLFVKRSENYSIPQLERLYTRMMKGVFEIKDKGMKGLKASVLRFLLKFVEEDANF 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 1 15 - -
Glsi14g1960 1205 ProSitePatterns AAA-protein family signature. 526 544 IPR003960 GO:0005524|GO:0016887
Glsi14g1960 1205 FunFam ATPase family AAA domain-containing protein 2B 557 642 - -
Glsi14g1960 1205 Gene3D - 379 649 IPR027417 -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 66 111 - -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 1 33 - -
Glsi14g1960 1205 FunFam ATPase family AAA domain-containing protein 893 1021 - -
Glsi14g1960 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 646 IPR027417 -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 126 296 - -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 1073 1104 - -
Glsi14g1960 1205 Pfam Bromodomain 914 982 IPR001487 GO:0005515
Glsi14g1960 1205 SMART AAA_5 417 558 IPR003593 GO:0016887
Glsi14g1960 1205 CDD Bromo_AAA 901 1011 - -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 229 259 - -
Glsi14g1960 1205 FunFam ATPase family, AAA domain-containing 2 379 562 - -
Glsi14g1960 1205 SMART bromo_6 901 1008 IPR001487 GO:0005515
Glsi14g1960 1205 ProSiteProfiles Bromodomain profile. 924 986 IPR001487 GO:0005515
Glsi14g1960 1205 Pfam ATPase family associated with various cellular activities (AAA) 421 556 IPR003959 GO:0005524|GO:0016887
Glsi14g1960 1205 Gene3D - 694 828 IPR027417 -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 129 169 - -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 170 228 - -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 1113 1130 - -
Glsi14g1960 1205 SUPERFAMILY Bromodomain 899 1013 IPR036427 GO:0005515
Glsi14g1960 1205 PANTHER AAA DOMAIN-CONTAINING 26 1018 IPR045199 -
Glsi14g1960 1205 MobiDBLite consensus disorder prediction 1073 1136 - -
Glsi14g1960 1205 Pfam AAA+ lid domain 583 620 IPR041569 -
Glsi14g1960 1205 Gene3D - 557 642 - -
Glsi14g1960 1205 Gene3D - 893 1021 IPR036427 GO:0005515
Glsi14g1960 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 854 IPR027417 -
Glsi14g1960 1205 PRINTS Bromodomain signature 967 986 IPR001487 GO:0005515
Glsi14g1960 1205 PRINTS Bromodomain signature 933 949 IPR001487 GO:0005515
Glsi14g1960 1205 PRINTS Bromodomain signature 949 967 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1960 Glsi-ChrGlsi14 20730920 20755972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1960 367 621 Calmodulin-binding Proteins AT3G56690 37.452 1.03e-41 164