Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1928 ATGAAATCATTCAAGCCGGCTCATGAGGGCGCTGGCACCGTCAAGGATTTCGAAGATCCCGAGATCCCATCGAACAATCTATGGGTTGGGAATTTGTCCTCCGAGGTGACAGAGTCTGATCTTATGGCACTCTTCGCTCAATACGGCGCCCTCGATAGCGTCACGTCGTATTCCGGTCGAAGTTACGGCTTCGTGTTTTTCAAGCGCATGGAAGATGCCAAGGCAGCTAAGAACGCGTTACAAGGCACTGTTCTGCGGGGAATTCCCATAAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACATCTTTGGGTGGGTGGTATTAGTCCAGCTGTTACAAAGGATGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTCCTCAGAGACCGCAACACTGCTTTTGTTGAATATTTCAATTTGGATGATGCAACTCAGGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGGGACCAGATTCGTGTGGACTTCCTTCGGTCGCAATCCTCAAAGAAAGATATGTTCCTTGATTATGGGCAGTTTCAGGGAAAAAGCATGGGCCCTATCGATTCCTATTCCGGTCAGAAAAGACCATTGCTCTCACAGCCTTCATTTGGGAGGAAGGGGGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTGGAATTTAGGAGTGTGGATGAAGCTCGCCGTGCCAAGGAGGGTCTTCAAGGCCGGCTCTTTAATGATCCACGAATTACGATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCTTGTACCCTGGAAGTAAAGGGCCAAGACCTGACATGTTCCTAAATGAGCATCCGTTTCGACCATTACAGATGGATGTATTTGGTCAAAATCGTCCGGCAGTTCCAAATAATTTTCCTGGACAGTTACCACCTGGTGTTATTATTGGACCGAATGTACAACTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAAACTTTGATTTCAGGCACTGAGTTTAATGATCTAGGCACACACCCAAAATTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAACTGGAAGAGGCCATCTCCTCCTGCACCAGGGATGCTTCCTTCTGCAGTGGGTATCAGGCCTCCTACTAGATCCACATCCGCTTCATGGGATGTGCTTGACATAAACCAATTTCAGAGGGATGCTAAACGGTCAAGGATAGATGGTCCTTTACCAGTTGATGATGCTCTATTTCCTTTAAGAAATGTTGATGATCGTGGATTAGCACTAGAACAATCTTTTGGGATTGAACCTGTAATTGATGGTGGTTCCAGTCCATTTGTAAACATCCAAGGAAAGACTCACCTTGGTCCAGTGGGCACAAGGGTCACAACTGGAGTACCTGGTTCTGTTCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACACCTGTTTGTCATGCAAGATGTGTCCCTATAGGAAAAGGAATAGGGACCGAGCTTCCGGAAGTTGTTGATTGCTCAGCGAGGACCGGATTGGATATGCTTACAAAACATTATGCTGATGCTATTGGTTTTGAAATTGTTTTCTTTCTACCGGATAGTGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTATCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATGGGACCACCCTATTCTTGGTACCTCCTTCTGATTTCTTGACAAAGGTTTTGAAAGTCACAGGGCCTGAGCGTCTGTATGGTGTGGTTCTTAAGTTTCCATCTGTGCCAAGTGGTACACCAATGCAACAATCACCGCACTTGCCTATAACTTCAACTCAGTATATTGACAGGCAGCAGATTCCTGCATCACAAGCAGAGTATAGTCTGATCCCTGCAAAAGAGGAACAAATTTTGCCAATGGATTATAACAGATTATTTCATGAGGAGTCTAAGCTTCCTCCAAAATCTCTTTATCCAGCTACAAGTGGCCCCCCTTCAGTTCAGTCTGTACCCCCAGATTATACTTCTAGTAATACTGTTGCTGCATCCCAACCTGGAGTCACATTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTACTTCCTGGAACTTCACAATCTCCTGCCACTGATGGTACCAAGCCAGCAGTAGGCTCCTCAACAGTGAAGCCTCCCTTTCCTCCGGTTGCACTTGCACCTACTGATGGAAACCAATCTCACTTATGGAAACAGGATCATCAAATTGCAGATCCATCTAGTCATACTCTTCAACAGTTGGGGAATACGTATAATCTTCAAAATCCTCACTATCAGCCTTCTCTACTATCATCTACTCATGCCCATCCTGGTCAAGTGGTCCCTGGAAGTTCTCATATCCAAGATTCTGCTGCCAGCCTACAGCAGCAGGGTGCTATTTCATCTAGATCCATGGCCAATTTCTTAATACCTTCTCAAAGTGGACAAGTGGCTGTATCACCCCAGGTCAACCAGCAATACCAGGTTGAAGTCTCCCCCAGCACTCAGAAAGGCTATGGAGTAGTTCAGGGAACAGATGCCTCTTGTTTATATAGTTCTCAGGCTTTCCAGCAACCTAATATTTCTATCTCCTCATCTAATCAAGTTCATGGTGCTAACCCTTCACAGCAACAAATTGCCGTGCCATATTCAGCAGACAAAATGAACTCAGAGCTTCCAAATCAACAATTTCAATCTGCTCTCCTTGGAGCAAGTCAGGGCACACCAGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACGCTACAGTTTGCTGCCAGTCTTCTCCTTCAAATACAGCAGCAGCAACAGCAAACTCAAGGAGGGCGTGGGCCTGGAAATCAACAATGA 3000 0.449 MKSFKPAHEGAGTVKDFEDPEIPSNNLWVGNLSSEVTESDLMALFAQYGALDSVTSYSGRSYGFVFFKRMEDAKAAKNALQGTVLRGIPIKIEFARPAKPCKHLWVGGISPAVTKDELEAEFRKFGKIEDFKFLRDRNTAFVEYFNLDDATQAMKMMNGKRIGGDQIRVDFLRSQSSKKDMFLDYGQFQGKSMGPIDSYSGQKRPLLSQPSFGRKGDGQPSNILWIGYPPSVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGLYPGSKGPRPDMFLNEHPFRPLQMDVFGQNRPAVPNNFPGQLPPGVIIGPNVQLRPFGPQGSLETLISGTEFNDLGTHPKFQDGSSKSQMGPNWKRPSPPAPGMLPSAVGIRPPTRSTSASWDVLDINQFQRDAKRSRIDGPLPVDDALFPLRNVDDRGLALEQSFGIEPVIDGGSSPFVNIQGKTHLGPVGTRVTTGVPGSVQPDIDHIWRGIIAKGGTPVCHARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFEIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPSVPSGTPMQQSPHLPITSTQYIDRQQIPASQAEYSLIPAKEEQILPMDYNRLFHEESKLPPKSLYPATSGPPSVQSVPPDYTSSNTVAASQPGVTLTPELIATLASLLPGTSQSPATDGTKPAVGSSTVKPPFPPVALAPTDGNQSHLWKQDHQIADPSSHTLQQLGNTYNLQNPHYQPSLLSSTHAHPGQVVPGSSHIQDSAASLQQQGAISSRSMANFLIPSQSGQVAVSPQVNQQYQVEVSPSTQKGYGVVQGTDASCLYSSQAFQQPNISISSSNQVHGANPSQQQIAVPYSADKMNSELPNQQFQSALLGASQGTPEVEADKNQRYQSTLQFAASLLLQIQQQQQQTQGGRGPGNQQ 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1928 999 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 95 - -
Glsi14g1928 999 SUPERFAMILY RNA-binding domain, RBD 101 293 IPR035979 GO:0003676
Glsi14g1928 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 90 IPR000504 GO:0003723
Glsi14g1928 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 168 IPR000504 GO:0003723
Glsi14g1928 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 288 IPR000504 GO:0003723
Glsi14g1928 999 Pfam SPOC domain 510 627 IPR012921 -
Glsi14g1928 999 Gene3D - 99 184 IPR012677 -
Glsi14g1928 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 174 IPR000504 GO:0003723
Glsi14g1928 999 MobiDBLite consensus disorder prediction 705 726 - -
Glsi14g1928 999 FunFam Flowering time control protein FPA isoform A 100 214 - -
Glsi14g1928 999 Gene3D - 13 98 IPR012677 -
Glsi14g1928 999 SMART rrm1_1 26 93 IPR000504 GO:0003723
Glsi14g1928 999 SMART rrm1_1 103 170 IPR000504 GO:0003723
Glsi14g1928 999 SMART rrm1_1 223 291 IPR000504 GO:0003723
Glsi14g1928 999 CDD RRM_SF 104 170 - -
Glsi14g1928 999 MobiDBLite consensus disorder prediction 384 398 - -
Glsi14g1928 999 FunFam flowering time control protein FPA 215 308 - -
Glsi14g1928 999 MobiDBLite consensus disorder prediction 381 408 - -
Glsi14g1928 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 97 IPR000504 GO:0003723
Glsi14g1928 999 FunFam Flowering time control protein FPA 17 99 - -
Glsi14g1928 999 Gene3D - 213 299 IPR012677 -
Glsi14g1928 999 MobiDBLite consensus disorder prediction 746 786 - -
Glsi14g1928 999 CDD RRM_SF 27 93 - -
Glsi14g1928 999 MobiDBLite consensus disorder prediction 807 847 - -
Glsi14g1928 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
Glsi14g1928 999 SUPERFAMILY RNA-binding domain, RBD 18 99 IPR035979 GO:0003676
Glsi14g1928 999 MobiDBLite consensus disorder prediction 746 761 - -
Glsi14g1928 999 MobiDBLite consensus disorder prediction 697 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1928 Glsi-ChrGlsi14 19755124 19764237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1928 6 285 Eukaryotic Initiation Factors Gene Family AT4G34110 25.817 2.96e-13 72.0