Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi14g1928 | ATGAAATCATTCAAGCCGGCTCATGAGGGCGCTGGCACCGTCAAGGATTTCGAAGATCCCGAGATCCCATCGAACAATCTATGGGTTGGGAATTTGTCCTCCGAGGTGACAGAGTCTGATCTTATGGCACTCTTCGCTCAATACGGCGCCCTCGATAGCGTCACGTCGTATTCCGGTCGAAGTTACGGCTTCGTGTTTTTCAAGCGCATGGAAGATGCCAAGGCAGCTAAGAACGCGTTACAAGGCACTGTTCTGCGGGGAATTCCCATAAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACATCTTTGGGTGGGTGGTATTAGTCCAGCTGTTACAAAGGATGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTCCTCAGAGACCGCAACACTGCTTTTGTTGAATATTTCAATTTGGATGATGCAACTCAGGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGGGACCAGATTCGTGTGGACTTCCTTCGGTCGCAATCCTCAAAGAAAGATATGTTCCTTGATTATGGGCAGTTTCAGGGAAAAAGCATGGGCCCTATCGATTCCTATTCCGGTCAGAAAAGACCATTGCTCTCACAGCCTTCATTTGGGAGGAAGGGGGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTGGAATTTAGGAGTGTGGATGAAGCTCGCCGTGCCAAGGAGGGTCTTCAAGGCCGGCTCTTTAATGATCCACGAATTACGATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCTTGTACCCTGGAAGTAAAGGGCCAAGACCTGACATGTTCCTAAATGAGCATCCGTTTCGACCATTACAGATGGATGTATTTGGTCAAAATCGTCCGGCAGTTCCAAATAATTTTCCTGGACAGTTACCACCTGGTGTTATTATTGGACCGAATGTACAACTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAAACTTTGATTTCAGGCACTGAGTTTAATGATCTAGGCACACACCCAAAATTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAACTGGAAGAGGCCATCTCCTCCTGCACCAGGGATGCTTCCTTCTGCAGTGGGTATCAGGCCTCCTACTAGATCCACATCCGCTTCATGGGATGTGCTTGACATAAACCAATTTCAGAGGGATGCTAAACGGTCAAGGATAGATGGTCCTTTACCAGTTGATGATGCTCTATTTCCTTTAAGAAATGTTGATGATCGTGGATTAGCACTAGAACAATCTTTTGGGATTGAACCTGTAATTGATGGTGGTTCCAGTCCATTTGTAAACATCCAAGGAAAGACTCACCTTGGTCCAGTGGGCACAAGGGTCACAACTGGAGTACCTGGTTCTGTTCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACACCTGTTTGTCATGCAAGATGTGTCCCTATAGGAAAAGGAATAGGGACCGAGCTTCCGGAAGTTGTTGATTGCTCAGCGAGGACCGGATTGGATATGCTTACAAAACATTATGCTGATGCTATTGGTTTTGAAATTGTTTTCTTTCTACCGGATAGTGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTATCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATGGGACCACCCTATTCTTGGTACCTCCTTCTGATTTCTTGACAAAGGTTTTGAAAGTCACAGGGCCTGAGCGTCTGTATGGTGTGGTTCTTAAGTTTCCATCTGTGCCAAGTGGTACACCAATGCAACAATCACCGCACTTGCCTATAACTTCAACTCAGTATATTGACAGGCAGCAGATTCCTGCATCACAAGCAGAGTATAGTCTGATCCCTGCAAAAGAGGAACAAATTTTGCCAATGGATTATAACAGATTATTTCATGAGGAGTCTAAGCTTCCTCCAAAATCTCTTTATCCAGCTACAAGTGGCCCCCCTTCAGTTCAGTCTGTACCCCCAGATTATACTTCTAGTAATACTGTTGCTGCATCCCAACCTGGAGTCACATTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTACTTCCTGGAACTTCACAATCTCCTGCCACTGATGGTACCAAGCCAGCAGTAGGCTCCTCAACAGTGAAGCCTCCCTTTCCTCCGGTTGCACTTGCACCTACTGATGGAAACCAATCTCACTTATGGAAACAGGATCATCAAATTGCAGATCCATCTAGTCATACTCTTCAACAGTTGGGGAATACGTATAATCTTCAAAATCCTCACTATCAGCCTTCTCTACTATCATCTACTCATGCCCATCCTGGTCAAGTGGTCCCTGGAAGTTCTCATATCCAAGATTCTGCTGCCAGCCTACAGCAGCAGGGTGCTATTTCATCTAGATCCATGGCCAATTTCTTAATACCTTCTCAAAGTGGACAAGTGGCTGTATCACCCCAGGTCAACCAGCAATACCAGGTTGAAGTCTCCCCCAGCACTCAGAAAGGCTATGGAGTAGTTCAGGGAACAGATGCCTCTTGTTTATATAGTTCTCAGGCTTTCCAGCAACCTAATATTTCTATCTCCTCATCTAATCAAGTTCATGGTGCTAACCCTTCACAGCAACAAATTGCCGTGCCATATTCAGCAGACAAAATGAACTCAGAGCTTCCAAATCAACAATTTCAATCTGCTCTCCTTGGAGCAAGTCAGGGCACACCAGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACGCTACAGTTTGCTGCCAGTCTTCTCCTTCAAATACAGCAGCAGCAACAGCAAACTCAAGGAGGGCGTGGGCCTGGAAATCAACAATGA | 3000 | 0.449 | MKSFKPAHEGAGTVKDFEDPEIPSNNLWVGNLSSEVTESDLMALFAQYGALDSVTSYSGRSYGFVFFKRMEDAKAAKNALQGTVLRGIPIKIEFARPAKPCKHLWVGGISPAVTKDELEAEFRKFGKIEDFKFLRDRNTAFVEYFNLDDATQAMKMMNGKRIGGDQIRVDFLRSQSSKKDMFLDYGQFQGKSMGPIDSYSGQKRPLLSQPSFGRKGDGQPSNILWIGYPPSVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGLYPGSKGPRPDMFLNEHPFRPLQMDVFGQNRPAVPNNFPGQLPPGVIIGPNVQLRPFGPQGSLETLISGTEFNDLGTHPKFQDGSSKSQMGPNWKRPSPPAPGMLPSAVGIRPPTRSTSASWDVLDINQFQRDAKRSRIDGPLPVDDALFPLRNVDDRGLALEQSFGIEPVIDGGSSPFVNIQGKTHLGPVGTRVTTGVPGSVQPDIDHIWRGIIAKGGTPVCHARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFEIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPSVPSGTPMQQSPHLPITSTQYIDRQQIPASQAEYSLIPAKEEQILPMDYNRLFHEESKLPPKSLYPATSGPPSVQSVPPDYTSSNTVAASQPGVTLTPELIATLASLLPGTSQSPATDGTKPAVGSSTVKPPFPPVALAPTDGNQSHLWKQDHQIADPSSHTLQQLGNTYNLQNPHYQPSLLSSTHAHPGQVVPGSSHIQDSAASLQQQGAISSRSMANFLIPSQSGQVAVSPQVNQQYQVEVSPSTQKGYGVVQGTDASCLYSSQAFQQPNISISSSNQVHGANPSQQQIAVPYSADKMNSELPNQQFQSALLGASQGTPEVEADKNQRYQSTLQFAASLLLQIQQQQQQTQGGRGPGNQQ | 999 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi14g1928 | 999 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 16 | 95 | - | - | |
Glsi14g1928 | 999 | SUPERFAMILY | RNA-binding domain, RBD | 101 | 293 | IPR035979 | GO:0003676 | |
Glsi14g1928 | 999 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 90 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 104 | 168 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 234 | 288 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | Pfam | SPOC domain | 510 | 627 | IPR012921 | - | |
Glsi14g1928 | 999 | Gene3D | - | 99 | 184 | IPR012677 | - | |
Glsi14g1928 | 999 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 102 | 174 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 705 | 726 | - | - | |
Glsi14g1928 | 999 | FunFam | Flowering time control protein FPA isoform A | 100 | 214 | - | - | |
Glsi14g1928 | 999 | Gene3D | - | 13 | 98 | IPR012677 | - | |
Glsi14g1928 | 999 | SMART | rrm1_1 | 26 | 93 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | SMART | rrm1_1 | 103 | 170 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | SMART | rrm1_1 | 223 | 291 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | CDD | RRM_SF | 104 | 170 | - | - | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 384 | 398 | - | - | |
Glsi14g1928 | 999 | FunFam | flowering time control protein FPA | 215 | 308 | - | - | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 381 | 408 | - | - | |
Glsi14g1928 | 999 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 97 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | FunFam | Flowering time control protein FPA | 17 | 99 | - | - | |
Glsi14g1928 | 999 | Gene3D | - | 213 | 299 | IPR012677 | - | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 746 | 786 | - | - | |
Glsi14g1928 | 999 | CDD | RRM_SF | 27 | 93 | - | - | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 807 | 847 | - | - | |
Glsi14g1928 | 999 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 222 | 295 | IPR000504 | GO:0003723 | |
Glsi14g1928 | 999 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 99 | IPR035979 | GO:0003676 | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 746 | 761 | - | - | |
Glsi14g1928 | 999 | MobiDBLite | consensus disorder prediction | 697 | 726 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi14g1928 | Glsi-ChrGlsi14 | 19755124 | 19764237 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi14g1928 | 6 | 285 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.817 | 2.96e-13 | 72.0 |