Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1923 ATGTCGTCAACCACGGCAGCAACCACTGTCTCCGGCGGCGACCACCTTGACACTCTGACACTTGACAGGGAGTCTCCTACACTCCTCCAGTCTATTTCCGAGCACGGAGGCTATGCTTATGTCAGCATGGCCGTTCTGGCCGCCGCCGGTGACTTTCGCGCTGCCGAAGCAGCTCGTGAGATGGCGTGGGAGCAGCTACACTCGGGGCCCTGGCATTCCGTCCTCCCAGTGTGGCGTGACGCATACTCTATGGCGTGCCTCCACGTTGCCAAGTACCATTATAGCATTGGTGACTTCAAGGAGGCCCTTAAGGCTTTGGATATGGGACTCATCATGGGAGGGATGCTTCTAAGGAACGACTTGGACTCTGCTGTACAGAAAGTTTCGGAGAAGGCCAGGAACATTATTAGGGTTTCTAAAGAAAGCTGTGAAGGTATGGGGAAGTACGAACCTCGACTTGTTGATCAGCAACTTAATATGACTGAGGTGCTCCGACTTTTACCAGTGAAGTCATTTTCATGTAAGACTGTGGTGAAGAAGTCCTCTCTATCATTGGAAAGCTTCCTAAAAGATTATTACCTGTCTGGTTCCCCAGTTATTATCAATGACTGTATGGCTCACTGGCCAGCCAAGACGAAATGGAATAACATAGATTATTTGAAAAGTGTTGTGGGTGACCGAACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGTTAATTACATTTTCAGAATTTCTTCAGCGGATAGAGTCTTATGGCTGTTCTTCTGGAGTCCCTACATATCTTGCTCAGCACCCATTATTTGATCAGATAACTGAGCTTCGGAAAGATATTTGTATTCCAGACTATTGTTTTGCTGGGGGAGGTGAGATGAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGGACTGTAACACCATTACACCATGATCCACACCATAACATATTAGCTCAGGTCGTTGGAAAGAAATATATAAGGCTTTACTCTGCGTCGTTGTCTGAGGAACTTTATCCCTATACTGAAACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGATATGGATGAAATGAAGTTTCCGAAGGTGCAAGACTTGGAATTTGTTGACTGCATTTTAGAAGAAGGCGAAATGCTATATATCCCGCCAAAGTGGTGGCACTATGTCCGCTCTTTGACAACCAGTTTCTCTGTTAGCTTTTGGTGGAGCGAGGGAGAAAAAGGTCGTGCATCCTAA 1257 0.4654 MSSTTAATTVSGGDHLDTLTLDRESPTLLQSISEHGGYAYVSMAVLAAAGDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKYHYSIGDFKEALKALDMGLIMGGMLLRNDLDSAVQKVSEKARNIIRVSKESCEGMGKYEPRLVDQQLNMTEVLRLLPVKSFSCKTVVKKSSLSLESFLKDYYLSGSPVIINDCMAHWPAKTKWNNIDYLKSVVGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIESYGCSSGVPTYLAQHPLFDQITELRKDICIPDYCFAGGGEMRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELYPYTETMLSNSSQVDLDDMDEMKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGEKGRAS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1923 418 Gene3D Cupin 176 410 - -
Glsi14g1923 418 FunFam lysine-specific demethylase JMJ30 176 409 - -
Glsi14g1923 418 SUPERFAMILY Clavaminate synthase-like 181 410 - -
Glsi14g1923 418 Pfam Cupin-like domain 187 411 IPR041667 -
Glsi14g1923 418 SMART cupin_9 261 416 IPR003347 -
Glsi14g1923 418 ProSiteProfiles JmjC domain profile. 261 418 IPR003347 -
Glsi14g1923 418 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1923 Glsi-ChrGlsi14 19684712 19694205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1923 169 409 Acyl Lipid Metabolism Gene Families AT3G45880 24.055 2.45e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi14g1923 Cupin_8 9.7e-49 CL0029