Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1906 ATGGACTCCGCAACTCCGCCCTCGCCGGAGCTGGATCTCGACAAGCTCAGAGCACTCAAAGTCCTCGGTAAGGGTGCCATGGGTACCGTCTTCCTCGTCAACGACACCTTAGCTGATCCCTCCGCCCGCTGCCCCTTCGCCCTCAAGGTCGTAGACAAATCCTCCATCCACACTAAGCTCGACGCTGATCGGCGTGCCCGCTGGGAAATCCAGGTCCTCACCAGCTTGTCTCATCCATTTCTCCCTTACCTTCTAGGCACATTCGACTCCGACCAATTCTTGGGTTGGGCCGTCCCTTACTGTCCGGGTGGCGACCTCAATGTCCTCCGTTACCGCCAAATAGACCGGGTCTTCTCCCCTGCCGTAATTCGCTTCTATTTGGCCGAAATCGTCTGCGCTCTCGAGCATCTTCATAGCCTGGGCATCGCGTACCGCGATTTAAAGCCGGAGAATGTCCTCATTCAGCAGTCCGGTCATGTGACCCTCACAGACTTCGATCTCTCCCGTAAGCTTACACCCAAAACCATCAAAACCGTTATTTCATCAATACCCGTCGAAGAAAACATGCCGGAAATTCGACGCAAACATCGTCGGAATTTTACTCGGTGGATTCCCGTCGCACCTGACATTAGTTACAATAAAAAAGGATTGAAGAAGGCCAAGTCCGCCCGAGTCAGCCCAGTGAGTCGACGCAAACCGAGTTTCTCAAATGGTGAGCGTTCTAACTCGTTCGTCGGCACGGAAGAGTACGTCTCGCCTGAGGTTGTCCGCGGCGACGGACATGAGTTCGCCGTTGACTGGTGGGCCCTGGGAATATTGACATACGAGATGTTGTATGGAACGACGCCGTTCAAGGGGAAGAATCGGAAGGAAACATTTCGAAACGTCTTGATGAAAGCGCCAGAATTCATAGGGAAGCGGACAGCGTTAACCGACTTGATAGATCGGCTGCTGCAAAAGGACCCCGTAAAGCGATTGGGTTACTTGCGTGGGGCGAGCGAGATCAAGGAGCATGAGTTCTTCAGAGGGGTAAGGTGGGAGCTATTGACGGAGGTAGTACGGCCGCCGTTCATTCCTTCAAGAGAGGTGGAGGAATTGACGGAGCGATTGAGTGGCGGCGGGGTTGACATAAGAGAATACTTCCAGAGATTAAAATCGGTGTCGTCGTTCCCTCCGTCACCTTCACCGTCGTCGGAGAAACACAGGAACGTGTCTTTAACAGAATTCTGA 1230 0.5341 MDSATPPSPELDLDKLRALKVLGKGAMGTVFLVNDTLADPSARCPFALKVVDKSSIHTKLDADRRARWEIQVLTSLSHPFLPYLLGTFDSDQFLGWAVPYCPGGDLNVLRYRQIDRVFSPAVIRFYLAEIVCALEHLHSLGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLTPKTIKTVISSIPVEENMPEIRRKHRRNFTRWIPVAPDISYNKKGLKKAKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLMKAPEFIGKRTALTDLIDRLLQKDPVKRLGYLRGASEIKEHEFFRGVRWELLTEVVRPPFIPSREVEELTERLSGGGVDIREYFQRLKSVSSFPPSPSPSSEKHRNVSLTEF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1906 409 Pfam Protein kinase domain 19 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1906 409 Pfam Protein kinase domain 236 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1906 409 ProSiteProfiles Protein kinase domain profile. 16 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1906 409 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Glsi14g1906 409 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Glsi14g1906 409 Gene3D Transferase(Phosphotransferase) domain 1 105 177 - -
Glsi14g1906 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Glsi14g1906 409 Gene3D Transferase(Phosphotransferase) domain 1 238 360 - -
Glsi14g1906 409 MobiDBLite consensus disorder prediction 388 409 - -
Glsi14g1906 409 Gene3D Phosphorylase Kinase; domain 1 16 104 - -
Glsi14g1906 409 SUPERFAMILY Protein kinase-like (PK-like) 14 374 IPR011009 -
Glsi14g1906 409 MobiDBLite consensus disorder prediction 388 402 - -
Glsi14g1906 409 SMART serkin_6 16 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1906 409 FunFam Serine/threonine-protein kinase UCNL 16 104 - -
Glsi14g1906 409 FunFam Serine/threonine-protein kinase OXI1 239 360 - -
Glsi14g1906 409 PANTHER FLIPPASE KINASE 1-RELATED 10 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1906 Glsi-ChrGlsi14 19489224 19490453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1906 11 409 AGC Kinase Gene Family AT3G20830 63.391 6.04e-169 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi14g1906 Pkinase 9e-31 CL0016